Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0636 ATGTCTCGGCCTCAGACATCACCATCTGATCAGACCCAAAAGGAAGAAACTTCATCACCTTCCTTTTCGTATCTTATCGGCACCGGTGATGATACTAAAACCTTCTCTGTCCCAATCTCACATGCTCAACTAAGTACCTCTTCTGGGTTGATCCAGAAGCAGGACCCATCATCCCAGCCGCCGACATATCAAAATCAAGGCAACAATAATGTGAGAAGAAAAAACTATAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCGGAAATCCGAGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGGACCTTCGAGACGGCTGAGGAAGCTGCCGCTGCTTATGATGCTGCAGCATTAAGGTTCAAAGGAAGCAAAGCAAAGCTTAATTTCCCCGAACGTGTTTCTTTAGGTACTTCTTCAGCCATCCCTTCTTCACAAACATCCCAGCTTCAGGCTTCTCATCCTAAACCGCCGACACCAGAGGTGGCACGAAAGGTGTCTCGCTCTATAGCGCCGTCGACGGACGATCAAGGGTTCCCGAACCTGCTCCAGTACGCGCAGCTGCTTTGTGCCGGTGATGATGACCTGCAAAGAGCTTCTTCGGGACTTCATAGTTGTCATCAGAACGAGCCATTTCATTATGATTCTTCTCCGTTATTCTCGTCATCATCAGGAGTGTCTTCCTCGTCTGCTTCTATGGCTGGGTCTGATCAGCGACAAGTTCCAGATACGCTGAGAGCACAAAAGGGAGATTATGGTTCTTCTTCTTCTGGTTCTTCTTTTTTTGATGAAAGAAACACGAGGGGATAG 813 0.4859 MSRPQTSPSDQTQKEETSSPSFSYLIGTGDDTKTFSVPISHAQLSTSSGLIQKQDPSSQPPTYQNQGNNNVRRKNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAAAAYDAAALRFKGSKAKLNFPERVSLGTSSAIPSSQTSQLQASHPKPPTPEVARKVSRSIAPSTDDQGFPNLLQYAQLLCAGDDDLQRASSGLHSCHQNEPFHYDSSPLFSSSSGVSSSSASMAGSDQRQVPDTLRAQKGDYGSSSSGSSFFDERNTRG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0636 270 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Lele05g0636 270 PANTHER DNA-BINDING DOMAIN 23 216 IPR044808 GO:0003700|GO:0009873
Lele05g0636 270 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Lele05g0636 270 CDD AP2 74 133 IPR001471 GO:0003700|GO:0006355
Lele05g0636 270 MobiDBLite consensus disorder prediction 218 270 - -
Lele05g0636 270 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Lele05g0636 270 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Lele05g0636 270 MobiDBLite consensus disorder prediction 1 79 - -
Lele05g0636 270 MobiDBLite consensus disorder prediction 1 74 - -
Lele05g0636 270 MobiDBLite consensus disorder prediction 138 156 - -
Lele05g0636 270 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Lele05g0636 270 MobiDBLite consensus disorder prediction 138 179 - -
Lele05g0636 270 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Lele05g0636 270 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Lele05g0636 270 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0636 Lele-ChrLele05 3743641 3744918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0636 54 194 AP2-EREBP Transcription Factor Family AT5G61890 56.338 4.28e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele05g0636 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0636 05 3743641 3744918 Lele05g0636 05 3743641 3744918 ECH
Lele05g0636 05 3743641 3744918 Lele06g0456 06 2798782 2800662 ECH
Lele21g1628 21 24240294 24243413 Lele05g0636 05 3743641 3744918 ECH
Lele22g1611 22 21628301 21644118 Lele05g0636 05 3743641 3744918 ECH
Lele23g0383 23 2773051 2774713 Lele05g0636 05 3743641 3744918 ECH
Lele05g0636 05 3743641 3744918 Lele07g0667 07 3802791 3804717 hybridization
Lele05g0636 05 3743641 3744918 Lele08g0469 08 2873322 2874606 hybridization