Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele05g0629 | ATGGCGACCAGATACTGGGTAGTCTCTCTCCCCGTTCAAAATTCGGCATCTGCTCTCTGGACTCAATTGCAGGAACAAATCTCCAAGCATTCTTTCGATACTCCTCTTTACAGATTCAATATACCTAATCTCCGTGTCGGAACCCTAGATTCTCTCCTTTCTCTCAGCGACGATCTTGTGAAGGCAAACAGTTTCATGGAAGGAGTGTCACACAAGATCAGGCGACAGATTGAGGAATTGGAGAAAGTTTCGGGTGTTGTTAGCAGCAGTCTGACAGTTGATGGGGTGCCAGTCGATTCATACTTGACCAGGTTTGTTTGGGATGAAGCGAAGTACCCGACTATGTCACCTTTGAAGGAGATTGTGGATGGTATTCACGGTCAAGTGGCAAAGATTGAGGATGATCTGAAGGTTCGTGTTGCTGAGTACAACAATATCCGGAGTCAACTAAATGCTATCAACCGAAAGCAAAGCGGAAGCTTGGCTGTCCGTGATCTTTCCAACCTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACCCTACTTGCAATTGTTCCTAAGTATTCTCAAAAGGACTGGCTCTCAAGCTATGAAACATTGACAAGCTATGTGGTACCCAGGTCATCCAAGTTGTTGTATGAGGATAATGAGTATGCTCTTTATACTGTAACACTCTTCACACGTGTTGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTTCAAATTCGTGATTTGGAGTACAGTCAAGAATCACATGAAAGCCGGAAGCAGGAGCTAGAGAAGTTGGTGCAAGATCAAGAAAGCACAAGAGGAATTCTTTTGCAGTGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTATACGTGTATTTACTGAGAGCATTCTGAGATATGGTTTGCCACCATCTTTCCTGGCAGCTGTCTTAGCTCCGTCCGCAAAAAGTGAGAAGAAAGTACGTTCCATACTTGAAGGCTTGGGTGACAGCGCAAACAGTGCATACTGGAAGACTGAGGATGAAGCAGGGAGTGGTATGACCGGTCTAGCAGGGGATTCTGATGCCCATCCATATGTCTCCTTCACTATCAATCTCGTATGA | 1131 | 0.4439 | MATRYWVVSLPVQNSASALWTQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKANSFMEGVSHKIRRQIEELEKVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVAEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLAIVPKYSQKDWLSSYETLTSYVVPRSSKLLYEDNEYALYTVTLFTRVADNFRTSAREKGFQIRDLEYSQESHESRKQELEKLVQDQESTRGILLQWCYTSYGEVFSSWMHFCAIRVFTESILRYGLPPSFLAAVLAPSAKSEKKVRSILEGLGDSANSAYWKTEDEAGSGMTGLAGDSDAHPYVSFTINLV | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele05g0629 | 376 | Gene3D | - | 41 | 312 | - | - | |
| Lele05g0629 | 376 | CDD | V-ATPase_C | 5 | 373 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
| Lele05g0629 | 376 | Pfam | V-ATPase subunit C | 5 | 369 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 | |
| Lele05g0629 | 376 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 6 | 334 | - | - | |
| Lele05g0629 | 376 | Gene3D | - | 163 | 251 | - | - | |
| Lele05g0629 | 376 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 1 | 375 | IPR036132 | GO:0015078|GO:0033180|GO:1902600 | |
| Lele05g0629 | 376 | Coils | Coil | 247 | 274 | - | - | |
| Lele05g0629 | 376 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
| Lele05g0629 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 2 | 375 | IPR004907 | GO:0033180|GO:0046961|GO:1902600 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele05g0629 | Lele-ChrLele05 | 3714865 | 3718839 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele05g0629 | 1 | 375 | Primary Pumps ATPases(2) | AT1G12840 | 82.133 | 0.0 | 652 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele05g0629 | 05 | 3714865 | 3718839 | Lele05g0629 | 05 | 3714865 | 3718839 | ECH | |
| Lele05g0629 | 05 | 3714865 | 3718839 | Lele06g0445 | 06 | 2728089 | 2732919 | ECH | |
| Lele05g0629 | 05 | 3714865 | 3718839 | Lele07g0660 | 07 | 3773849 | 3778165 | hybridization | |
| Lele05g0629 | 05 | 3714865 | 3718839 | Lele08g0459 | 08 | 2801891 | 2805831 | hybridization |