Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0586 ATGGCGATGGAAGTAGAGCAGAAACTAGAATCAGGGTTCCCGTACTGGAACGCTTTCCGTCGCCGTTTCGGCCCGGACTCTCCTTTCTTTGCTCCCGGTAACATCGAACGGGAACTTCTTGCCAAACAGATTGCCCTGGAGTTAACTGCCGAAGAGAAACAACAGCTTTTAGTACAAGATGAATACAGTAAAGTCTTCTGTCCCATTGCTGGTTGTGGAGCACGCTTGCCTTCCTTGGAGGAATTCGAGAATCATTATAATGCACGGCATACTGCTTCTTGTTCAGTGTGTTCTAGAGTCTACCCTACATCTCGCCTGCTAAGCATACATATTTCTGAAATGCATGATTCATTCTTTCAAGCAAAGGCTGCACGTGGCTATGATGTGTATGAGTGCTTAGTGGAAGGCTGTGGTTTAAAGTTTAAATGCTACAAGAGTAGGCACCAACACCTCATTGACAAGCATAAGTTCCCCACTTCATTTGAGTTTTTAAAGAAGGCTCAACCATCAAAGAAACAAAGGCAGAAGGTTCAACGGAAACAAGCTACACACAAGGAGAATGATTCAAGAACAATGGAAGTGGATAATGCAACCATGGATGGCCTTGTAACGGCAGTCTCTAAATTAAGTACTTCGGCCTCAACCCCATCATCTGTCAGCTTTGGTCGCCGGCACACTCGTGGTTTGACATTTGTCCCTAGAGCTGTTCAGCGTGAAGTGGGATCAAACACTGCATCACCTAGAAGAAAACAGTAA 756 0.4524 MAMEVEQKLESGFPYWNAFRRRFGPDSPFFAPGNIERELLAKQIALELTAEEKQQLLVQDEYSKVFCPIAGCGARLPSLEEFENHYNARHTASCSVCSRVYPTSRLLSIHISEMHDSFFQAKAARGYDVYECLVEGCGLKFKCYKSRHQHLIDKHKFPTSFEFLKKAQPSKKQRQKVQRKQATHKENDSRTMEVDNATMDGLVTAVSKLSTSASTPSSVSFGRRHTRGLTFVPRAVQREVGSNTASPRRKQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0586 251 MobiDBLite consensus disorder prediction 209 224 - -
Lele05g0586 251 MobiDBLite consensus disorder prediction 209 251 - -
Lele05g0586 251 PANTHER UNCHARACTERIZED 10 239 IPR039258 -
Lele05g0586 251 SMART c2h2final6 92 115 IPR013087 -
Lele05g0586 251 SMART c2h2final6 65 90 IPR013087 -
Lele05g0586 251 SMART c2h2final6 130 155 IPR013087 -
Lele05g0586 251 MobiDBLite consensus disorder prediction 165 196 - -
Lele05g0586 251 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0586 Lele-ChrLele05 3445560 3447593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0586 2 246 C2H2 Transcription Factor Family AT5G14140 65.098 1.00e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g0586 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0586 05 3445560 3447593 Lele05g0586 05 3445560 3447593 ECH
Lele05g0586 05 3445560 3447593 Lele07g0612 07 3503060 3505109 hybridization
Lele05g0586 05 3445560 3447593 Lele08g0413 08 2533282 2534574 hybridization