Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0546 ATGGTGAGCGAAGAAGAACAAAGACGCAGCCCGCAGAACCAAATTGATCCATCAAGAGGAGGTATCTTCAGCCCCAGATTCAAATCTGTAGCTGCTTTGGCTGGTTGGGATGAGGAGGCCCTTCTAATCGCCAGCCTCGTCGTCGAAGACACCCCTGATAGAGCTTCCAAGCATAAACACTTTGATCTTAACATCAAGACTCCACCCACCAATTCAAGAAGGAAACGCAGAGCCCAGAGGAGTCCACATCCAATCCCGGTTACGGTTCTTGACCTTGATGACGACGAGACTCCCAGAAAGAATAATGTAAAGAAGCAGAAAGAAAACAGAACAAGTGCTAACGAAGCGGGAGGGAATATTTTGACCCAGCAGACCTCTGCTTCTTCTTCTTCTTCGGGATCTGCTCTTCCCTGCTTTGATAAACTCAGGGAGGAGCTTTCCTGCGCTATTTGTCTGGAGATATGCTTTGAACCAAGCTCTACTCCTTGTGGACACAGCTTTTGTAGAAAATGCCTTCGATCTGCAGCGGATAAATGTGGAAGAAAGTGCCCAAAGTGCAGACAACTGATTAGTAATGGACGATCTTGCACCGTGAACACAGTACTTTGGAATACAATACAGCTCCTTTTTCCCAATGAAGTGGAAGCGAGGAAAGCAGCAGGAGCCTTAAATATCCGAGAAGCTCAGCAGCGCATGAGTCCAGAAACAGCATTCTATAATAACCTAAGGAATCGAAGCACGGGAACAATTGAGGCACCAAGCAGAGGTACAGCAAGTTGGAGGAGAAGAGTGATCACAACAACCCAAGATGAGGATGAAGATGCTGCATTGGCAAGAAGGTTGCAGCGGGAGGAAAATGGGGCAGTTCAGAATAATAATTCAAGGACTCAGACCCCACCATCAGCATCGTCTTCAAGAGGGAGGTCAAGAAGAAGGATAACGAACCAAGACGAGGATGCTGCTTTGGCTCTGAGGTTGCAGAGGGAAGAGTTTATGCGGGCTTTTAGGGGAAGCCAGGTACATACGGACACAAGTGGGTCAGCATTGTCTTCAGCAAGGGCAAATTTGAGGGCCATGGCGTCCAGAGTCATCAACCTTCGAAATAGAGACCTAAGATTATAA 1122 0.475 MVSEEEQRRSPQNQIDPSRGGIFSPRFKSVAALAGWDEEALLIASLVVEDTPDRASKHKHFDLNIKTPPTNSRRKRRAQRSPHPIPVTVLDLDDDETPRKNNVKKQKENRTSANEAGGNILTQQTSASSSSSGSALPCFDKLREELSCAICLEICFEPSSTPCGHSFCRKCLRSAADKCGRKCPKCRQLISNGRSCTVNTVLWNTIQLLFPNEVEARKAAGALNIREAQQRMSPETAFYNNLRNRSTGTIEAPSRGTASWRRRVITTTQDEDEDAALARRLQREENGAVQNNNSRTQTPPSASSSRGRSRRRITNQDEDAALALRLQREEFMRAFRGSQVHTDTSGSALSSARANLRAMASRVINLRNRDLRL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0546 373 MobiDBLite consensus disorder prediction 54 133 - -
Lele05g0546 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 217 IPR013083 -
Lele05g0546 373 MobiDBLite consensus disorder prediction 242 264 - -
Lele05g0546 373 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Lele05g0546 373 MobiDBLite consensus disorder prediction 1 23 - -
Lele05g0546 373 SMART ring_2 148 186 IPR001841 -
Lele05g0546 373 MobiDBLite consensus disorder prediction 242 316 - -
Lele05g0546 373 MobiDBLite consensus disorder prediction 89 111 - -
Lele05g0546 373 PANTHER UNCHARACTERIZED 312 365 - -
Lele05g0546 373 MobiDBLite consensus disorder prediction 112 133 - -
Lele05g0546 373 MobiDBLite consensus disorder prediction 285 309 - -
Lele05g0546 373 SUPERFAMILY RING/U-box 140 210 - -
Lele05g0546 373 ProSiteProfiles Zinc finger RING-type profile. 148 187 IPR001841 -
Lele05g0546 373 Pfam Zinc finger, C3HC4 type (RING finger) 148 186 IPR018957 GO:0046872
Lele05g0546 373 MobiDBLite consensus disorder prediction 265 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0546 Lele-ChrLele05 3195875 3197487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0546 145 191 C3H Transcription Factor Family AT3G07200 44.681 5.48e-06 44.7