Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0544 ATGGGAAGGCAACCTTGTTGTGATAAGATTGGTCTAAAACGAGGCCCTTGGACTATTGAGGAAGATTACAAGCTCATCAACTTCATCCTCAACAATGGCATCCACTGTTGGCGCATGGTTCCCAAACTTGCAGGTCTTCTGAGATGTGGGAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGGTTCACTGAAATGGAAGAGGATCAAATCATTCAGCTACATTCACGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCTGGGAGGACAGACAATGAGATCAAGAACCATTGGAATACGAGGATAAAGAAGAAGATGAAGCTCATGGGTCTGGACCCCGTGACACACATGCCGATTGAGCAAGTCACTGATAATAAGAAACAGATCAGAAACCAGTCAAGGCCGAGTTCTGCAGAAAATGTGGAGATGATAATGAAATCCTCCGACAGTAGTAGCTGCTGCACACGGGTTGTTTCAGAAGAACAAGGGAAAAACAAGGAAAAATTGAACAAGGTGACAACTTGGGATGATACCTATGATCTTCCGAACAAAAACGACAAAATATGCTCCGACGAGTTGGAGTTGGGGTCGTGGATGATGAACCAAGAGAAAAACACCAGTACAAGCTCTTCGTCTTTTTCTCTGGAAGATTCTAGCCACCTTTCCGTGAGTGAATCTTCGTACCCGCAGGAAAACTCTTTAATGGAATGGGTTGATAGTATTAGTATGGAATCCATTCTGCAATGGGATGGCTTCGATCCTCTGGATCAGGATCTTAATTTCTACTTTGGAAATAGATAA 831 0.4368 MGRQPCCDKIGLKRGPWTIEEDYKLINFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKKMKLMGLDPVTHMPIEQVTDNKKQIRNQSRPSSAENVEMIMKSSDSSSCCTRVVSEEQGKNKEKLNKVTTWDDTYDLPNKNDKICSDELELGSWMMNQEKNTSTSSSSFSLEDSSHLSVSESSYPQENSLMEWVDSISMESILQWDGFDPLDQDLNFYFGNR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0544 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele05g0544 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele05g0544 276 FunFam MYB transcription factor 68 129 - -
Lele05g0544 276 Gene3D - 11 67 - -
Lele05g0544 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele05g0544 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele05g0544 276 CDD SANT 70 110 IPR001005 -
Lele05g0544 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele05g0544 276 SMART sant 13 63 IPR001005 -
Lele05g0544 276 SMART sant 66 114 IPR001005 -
Lele05g0544 276 Gene3D - 69 153 - -
Lele05g0544 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele05g0544 276 FunFam MYB transcription factor 11 67 - -
Lele05g0544 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele05g0544 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 223 - -
Lele05g0544 276 CDD SANT 16 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0544 Lele-ChrLele05 3188645 3189696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0544 1 143 MYB Transcription Factor Family AT5G16600 72.917 1.69e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g0544 Myb_DNA-binding 8.5e-11 CL0123