Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0542 ATGGAGGGTATAGAACCTGATATAAAAAGACATCCGTCAGAATATGATGTGCAAAATGAAGGTCAAATATCTCCTGGAGCAGCAATTGACGTTGGACAACAGAGTCAAAGCCCCAATGCTTCCTCAATTGCAGATAGCGACATGGTCATTGATACTGAGAATGAGTGTACAAGCCCGAATATTGGTCCTGTTGACCCAAGTCAGATGGGAAATGATGATGATTGTCTGAATCCAAACATTTCTTGTGATCACAATTTTCAGATTGAGGCTGCGAATGGAATTCTCTCTCAGGAATCAGACATATCCTCTATTGATGTATCAAGTAACATTGATGTCATAAAAACTGAGGGGGAGCCGTCCATGGCGCCAAAAGTAGGCATGGAGTTTGATTCAGAAGACCATGCTTACAAGTGTTATAGCAGGTATGCTGTTTTGAAAGGTTTCAGCATAAGAAAAGATTTTGTCAACAAAAGTAGGGTGAATGGTGCAGTGGTATCTAGAAGATACACTTGCTACAGACAGGGTTATCGGCCTAATAAACATAATGCCAATGTGAGGAAATCCCAGCCAGAAACAAGGACAGGATGCCTGGCACATATGACTATTGCCCGCCAGCCCAATGGCAAGTTTAGTGTCACTCATTTTGAAACAAAGCACAATCATGAGTTTGCAACACCCTGTACTGTTCATATGTTACCATCTCAGAGAAGATTGAGTTTTGCTCAAGCAGTTGAATCTAACGTGTCTAATAATTCTGTGTTGGATGGGGTACCAAAACTTGGAATGGGATTTGATTCAGAAGATCACGCATATGAGTTTTATAATACATATGCTGGACGTGTAGGTTTCAGTGTTCGTAAAGATTATGTAAATAGAAGTAAAATTGATGGTGCTGTAGCATCTAGAAGGTTCACATGCTTTCGAGAAGGTTTTCGGCAGAAAGACAAACGTGATATGAATGTGAAGAGGCGTCGAAAAGAAACTAGAATTGGATGTTTAGCACAACTGGTAATTTCTCGTCAACCTGATGGTAGATATTGTGTGACTCATTTTGAAGAAAAGCATAACCATGAGCTTGTTGCTGCTTGTAGAGTTCACATGTTACGATCACAGAAGAGAATAGCCACGAATCAAGCCATTAAGAGCGACATGGTAGATGGTTCCAGGGTGTTTCCTAAGTCTGGATCACATTGCAAGGCTATTGAAGGTTTAGATGATCGGGGTTGTGACCCCGTAGAATATGGAAATAAATTGCCTTTCAAGCGTACAAGAGGAATGAAAGAGGGAGAAGTTGAAAAGCTAAAGCGTCACTTGCAAAGCAAGCGATCAAAAAATCCTTCCTTCTTCTATGCTTTCCAACTTGATTCTGATGAGCAAATAACTAATATGTTTTGGGCAGACACAAAGATGGTAGGAGACTACTGTGATTTTGGTGATGTTGTCTGCTTTGATTGTAGTTACAGATTTTGTGGAGACTCCCGCCCATTTGCTCCATTTCTTGGTGTCAATAATCACAAGCAAATGACTATCTTTGGGGCTGCACTTCTATATGATGAAACGATTGAATCTTTCAAGTGGCTATTTCAAGTTTTCTTGGAGGCAATGTCCAGAAGACAGCCAAAGACAATTCTTATAGATCAAGATGATATAATAGCTGAAGCAGTCTCTTCTGTCTTGCATGAAACTAACTGCCAAATCTGTGCATGGCATGTGTACCAAAATACACTAAATCAATTCAGTCACATGTTTGTGGGATCTAATTCTTTTGTTAATGATTTGAGAAGCTGCTTTTTTTACCATGAGGAGGAGGAAGACTTTGTTAATGCATGGAATGATTTCCTGGGCAGGTATAATCTTTTGGAAAATGAATGGTTGTGTCGAATATATGAAAGTAGAGACAACTGGGCCTTAGCATATGTAAGGCAAAATTTCTGTGGTGACATAACGGATGTTCTGTGGAGAGAAAATATTACTGGTAGCTTGAAGAAGCACCTAACGAATGATACGGATGTGCTATCATTTCTCAAGCATCTTGGGAAGGTGGTGGCTGATTGGAACTACAAGGAATTAGAAGCCAATTATGATATGAGCCAGCGTATGCCGGCACTGATGGGAGATGTGATTCTTTTGAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAGTTATTCCAGCAAGAATACGAAACTTGTTTAAATCTAGTGATAAAGCATTGCAGTGAGAGCGGATCATTGTACAGTTATAAAGTTAGTATATACGAACACGTACGAGAGTATACAGTTACCTTTGATTCATCTAACGAGACTGTGAGCTGCAGCTGTATGAAATTTGAGTCGATGGGAATCTTATGCAGCCATGCATTGAAAGTTCTTGATTACAGGAATATAAGGATACTTCCTTCATTGTACATCTTAAAGAGATGGACAAAAAATGCGAGACTTGATTTTTGGAGGCAAACTTGA 2466 0.397 MEGIEPDIKRHPSEYDVQNEGQISPGAAIDVGQQSQSPNASSIADSDMVIDTENECTSPNIGPVDPSQMGNDDDCLNPNISCDHNFQIEAANGILSQESDISSIDVSSNIDVIKTEGEPSMAPKVGMEFDSEDHAYKCYSRYAVLKGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYRPNKHNANVRKSQPETRTGCLAHMTIARQPNGKFSVTHFETKHNHEFATPCTVHMLPSQRRLSFAQAVESNVSNNSVLDGVPKLGMGFDSEDHAYEFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRDMNVKRRRKETRIGCLAQLVISRQPDGRYCVTHFEEKHNHELVAACRVHMLRSQKRIATNQAIKSDMVDGSRVFPKSGSHCKAIEGLDDRGCDPVEYGNKLPFKRTRGMKEGEVEKLKRHLQSKRSKNPSFFYAFQLDSDEQITNMFWADTKMVGDYCDFGDVVCFDCSYRFCGDSRPFAPFLGVNNHKQMTIFGAALLYDETIESFKWLFQVFLEAMSRRQPKTILIDQDDIIAEAVSSVLHETNCQICAWHVYQNTLNQFSHMFVGSNSFVNDLRSCFFYHEEEEDFVNAWNDFLGRYNLLENEWLCRIYESRDNWALAYVRQNFCGDITDVLWRENITGSLKKHLTNDTDVLSFLKHLGKVVADWNYKELEANYDMSQRMPALMGDVILLKHARDPYTPKIFELFQQEYETCLNLVIKHCSESGSLYSYKVSIYEHVREYTVTFDSSNETVSCSCMKFESMGILCSHALKVLDYRNIRILPSLYILKRWTKNARLDFWRQT 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0542 821 MobiDBLite consensus disorder prediction 28 43 - -
Lele05g0542 821 Pfam MULE transposase domain 480 574 IPR018289 -
Lele05g0542 821 Pfam FAR1 DNA-binding domain 272 360 IPR004330 -
Lele05g0542 821 Pfam FAR1 DNA-binding domain 139 224 IPR004330 -
Lele05g0542 821 ProSiteProfiles Zinc finger SWIM-type profile. 760 796 IPR007527 GO:0008270
Lele05g0542 821 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 110 242 IPR031052 GO:0006355
Lele05g0542 821 MobiDBLite consensus disorder prediction 1 16 - -
Lele05g0542 821 MobiDBLite consensus disorder prediction 1 43 - -
Lele05g0542 821 Pfam SWIM zinc finger 760 795 IPR007527 GO:0008270
Lele05g0542 821 MobiDBLite consensus disorder prediction 53 72 - -
Lele05g0542 821 SMART 26again6 771 798 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0542 Lele-ChrLele05 3179650 3182115 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele05g0542 MULE 2.1e-19 CL0219