Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0536 ATGGGCTCGCCGCTGAATTCGGCCCAAAATATATCAACAGTGCCACGGCCTGACCTAGTTGCCCAGGACGTGCACAGGAGAATCAATGCATCTAGAAGAAACCTGGGGTATTTATCTTGCGGAACTGGGAACCCCATTGATGACTGCTGGCGTTGTGACTCCAACTGGGAGACAAACCGGCAAAGGCTAGCCGATTGCGCCATTGGGTTCGGTAAGGACGCCGTTGGAGGAAGAAACGGCAGAATCTACGTCGTCTCCGACTCTGGGGATGACGACCCGGTGAACCCCAAGCCAGGTACTCTCAGACACGCCGTCATACAGGAGGAGCCACTGTGGATCATCTTCAACAGAGATATGGTGATCAATCTGAAGCAAGAGCTTATCATGAACTCCTTCAAGACCATCGACGGAAGGGGAGCCAGCGTTCACATCGCCGGCGGCGACAAGGACATGCAGGTGACTGTGGCGTTTAATCACTTCGGAGAAGGGCTTGTACAGAGAATGCCGAGGTGCAGGCACGGGTATTTTCACGTGGTGAACAACGATTACACTCACTGGGAAATGTACGCCATTGGAGGAAGTGCCGATCCTACCATTAACAGCGAAGGGAATAGGTTTCTTGCTCCTGATAATAGGGCTAGCAAAGAAGTGACGAAGCACGAGGATGCTCCTGAGAGCGAGTGGACGAACTGGAATTGGAGATCAGAAGGTGATCTTTTCTTGAACGGAGCATTCTTCATGCAGTCTGGTGCTGCATCTTTTTCATCACCCTATGCTAGGGCTTCAAGTCTGAGTGCTAGGCCGTCTTCTCTGGTTGGTTCTATCACCGTCGGTGCCGGTGCACTTATCTGCAGAAAGGGCACTCGTTGCTGA 873 0.5235 MGSPLNSAQNISTVPRPDLVAQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDSNWETNRQRLADCAIGFGKDAVGGRNGRIYVVSDSGDDDPVNPKPGTLRHAVIQEEPLWIIFNRDMVINLKQELIMNSFKTIDGRGASVHIAGGDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSEGNRFLAPDNRASKEVTKHEDAPESEWTNWNWRSEGDLFLNGAFFMQSGAASFSSPYARASSLSARPSSLVGSITVGAGALICRKGTRC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0536 290 SMART amb_all 18 212 IPR002022 -
Lele05g0536 290 PANTHER PECTATE LYASE 18-RELATED 148 288 IPR045032 GO:0030570
Lele05g0536 290 Gene3D - 149 283 IPR012334 -
Lele05g0536 290 Gene3D - 43 148 IPR012334 -
Lele05g0536 290 SUPERFAMILY Pectin lyase-like 64 290 IPR011050 -
Lele05g0536 290 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Lele05g0536 290 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Lele05g0536 290 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Lele05g0536 290 Pfam Pectate lyase 148 206 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0536 Lele-ChrLele05 3149270 3151377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0536 148 290 Polysaccharide Lyase AT4G24780 81.119 5.52e-73 228