Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0519 ATGTCGAAATCATTATATCTAACTCACGTATCGTTCTTCTTATCTAATTCTAGAGTTATGGCCTCTGCAAGAGTTTTCTATCATGTGCTTCCATCTACGAAATTCACATCCTTCAACAAAGCAGGCACTTTCTCCCTATCATCCTCCCTACGAAACTACTCCACCACTCAAACCCCATACCCACTTCAGTACGAGATGATTATCAACCGTCCAGTCAATTCCGTGCATGCCCACTCTCGCCGTCGACCTGTTCGACAAAATGACTCCAACGCAGAGAGCTTTCCTGACTCCGAGTCTCCGGAAGAGTCCGTTTCTCCAGAAGAGTCAGTTTCTGAATTGGGATTAGATAGCTGGGTCGATCGGAAATTGGCTTTTGAGGAAGAAGCTAATCAACCCGGTTCCCAAAAAGCGGAGCTTGACAAGGCTAAGAAAAAATATTACAGAAAACGGAGCAAGAGGATGTATGGGTCGGACTCTGATGAAGAAAATAGGCGACCCGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTAGAGCTTCCTACATTGCACAAGAGAGAGGAGGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGTTGGAGAAGAAATATTTTCCTGATCAGTGTCTTGATAAAGCGTTCCTAGAACCGGGGGAATCAAATGTAAACGTGAATGTAAATACGGATACAAAGACTAAGAGCAAGGCGAGGGAAAAGAAGAAAGTCAGGGAAGATAGAAGAGAGCAAAAAGATGAGGCTAGTGATGAAAGAAATGATAAGAAGTTGATATTCTTCGAGGAGAAACAAGAAGAGAAAAAGGATAATAGAGGATTAGTTAAGGAAGCAAGAGAAGATCTAACCGAAAAGAAGGTCGAAGAGTTCTTCAAATATTTGAAGAAAATTCCTAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGGGTCAAGGAATTCGGGGCTTCCTCCTAGATGGGATAGCCCTCGTGGAACCGTTGTTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGCGGGAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTTGGTCATGCTGGAACTCTTGATCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTTGTGGATAGATATCAAGGGATGATTAAGGGCTATAGTGGTGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCGGTCATTCTGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAGAACTGCAGCATCCTTTTCTGGTGAGATTTGGCAAGTTCCCCCAATGTTCTCTGCCATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACATATATTCGGTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGGAGAGATTCAATAGGAGAATATTCAGCAGATGATGCATGGGAGTTTGCAGAGCTGGAAGAGGCTATTTCCAAAAGTTATTTCTAA 1689 0.4275 MSKSLYLTHVSFFLSNSRVMASARVFYHVLPSTKFTSFNKAGTFSLSSSLRNYSTTQTPYPLQYEMIINRPVNSVHAHSRRRPVRQNDSNAESFPDSESPEESVSPEESVSELGLDSWVDRKLAFEEEANQPGSQKAELDKAKKKYYRKRSKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNVNVNVNTDTKTKSKAREKKKVREDRREQKDEASDERNDKKLIFFEEKQEEKKDNRGLVKEAREDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLGSRNSGLPPRWDSPRGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVILREPWEHIKDEDIKRTAASFSGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWEFAELEEAISKSYF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0519 562 Coils Coil 251 271 - -
Lele05g0519 562 MobiDBLite consensus disorder prediction 75 113 - -
Lele05g0519 562 TIGRFAM TruB: tRNA pseudouridine(55) synthase 344 553 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele05g0519 562 MobiDBLite consensus disorder prediction 88 106 - -
Lele05g0519 562 Pfam TruB family pseudouridylate synthase (N terminal domain) 364 514 IPR002501 GO:0006396
Lele05g0519 562 CDD PseudoU_synth_EcTruB 345 556 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele05g0519 562 FunFam tRNA pseudouridine synthase B 339 561 - -
Lele05g0519 562 Pfam tRNA pseudouridylate synthase B C-terminal domain 515 558 IPR032819 -
Lele05g0519 562 Coils Coil 277 297 - -
Lele05g0519 562 MobiDBLite consensus disorder prediction 243 267 - -
Lele05g0519 562 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 215 560 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele05g0519 562 SUPERFAMILY Pseudouridine synthase 344 556 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele05g0519 562 Hamap tRNA pseudouridine synthase B [truB]. 342 562 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele05g0519 562 MobiDBLite consensus disorder prediction 232 267 - -
Lele05g0519 562 Gene3D Pseudouridine synthase 339 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0519 Lele-ChrLele05 3040411 3044413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0519 310 536 NAC Transcription Factor Family AT3G57150 31.718 2.33e-21 95.9