Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0504 ATGGAATCACCCATTAACGACCCTGCTGTTGATGGAGAAACCAACGATGCGAGGTCCTTAGGCCACAGAGAAGAGGAGGAGGATAAGTCTCATCCTCTTACCGGCGATGGGGCAAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTGATAATGAAGGACCGGAAGACTGGGCAACCACGAGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTAGTTGATAAGGTCATCGAGGATACTCATGTCATCAACGGCAAACAAGTGGAGATTAAACGTACAATACCAAGAGGAACTGTTGGCTCTAAGGATTTCAGGACAAAAAAAATTTTTGTGGGTGGAATTCCCTCAACTGTGACTGAAGATGAGTTTAGAGACTTCTTTACTCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCTACCAATCGTTCTCGTGGCTTTGGGTTTATTACTTTTGACTCTGAGGAAGCTGTTGAAGATCTCCTGTCTAAGGGGAACAAAATAGAGTTTGCTGGGGCTCAGGTGGAAATAAAAAAGGCTGAGCCAAAGAAATCAAACCCACCACCAGCTTCCTCCAAGCGCTATAATGATTCAAGATCTTCATTTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGTGGCTATGGTGTAGGGGGATATAGGTCAGGTGGTGTCTATGGTGGTAGGGGTGGTCCCTATGGTGGCTATGGGGGTGAATTTGGTGGTTATGGAGGATATGCTGGGGCCATGGGGCCTTATAGAGGAGATCCCTCCCTTGGGTACTCTGGTCGATATGGAGGTGGGTTTAGCAGAGGTTATGACCTTGGAGGATATGGTGGACCTAGTGAGAGTTATGGGGGATACGGTGGCGTTGGTTCTTCGGGTGGTGCTTATGGAAGCGGGTATGATGCTGGCTTGGGGGGCGGATATGGCAGCAGTGGTGGTAGTGGCGTTGGAGGTTCCTATTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATACCATCCTTACGGAAGATAG 1110 0.4721 MESPINDPAVDGETNDARSLGHREEEEDKSHPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGTVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLSKGNKIEFAGAQVEIKKAEPKKSNPPPASSKRYNDSRSSFGGGYGDAYDGFGGGYGVGGYRSGGVYGGRGGPYGGYGGEFGGYGGYAGAMGPYRGDPSLGYSGRYGGGFSRGYDLGGYGGPSESYGGYGGVGSSGGAYGSGYDAGLGGGYGSSGGSGVGGSYYGSRGGYGGAGSGRYHPYGR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0504 369 MobiDBLite consensus disorder prediction 203 223 - -
Lele05g0504 369 MobiDBLite consensus disorder prediction 1 40 - -
Lele05g0504 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Lele05g0504 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Lele05g0504 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Lele05g0504 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 369 - -
Lele05g0504 369 SUPERFAMILY RNA-binding domain, RBD 125 237 IPR035979 GO:0003676
Lele05g0504 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 120 - -
Lele05g0504 369 SMART rrm1_1 42 113 IPR000504 GO:0003723
Lele05g0504 369 SMART rrm1_1 130 203 IPR000504 GO:0003723
Lele05g0504 369 Gene3D - 117 223 IPR012677 -
Lele05g0504 369 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Lele05g0504 369 Gene3D - 41 116 IPR012677 -
Lele05g0504 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Lele05g0504 369 FunFam Heterogeneous nuclear ribonucleoprotein 1 121 242 - -
Lele05g0504 369 MobiDBLite consensus disorder prediction 16 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0504 Lele-ChrLele05 2968220 2971323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0504 41 195 Eukaryotic Initiation Factors Gene Family AT1G71770 27.273 1.69e-10 60.8