Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0474 ATGAATATCCTATTTGCTGTCTGGTATTGTGAAGTAGACTTTGTCACTTGTTCGACACTTCTAGGGGAAGAAGCTTCTACTGGTGCGGCAGATGGAGATAATTCTGGTTTGGAGAGTGACAATTATGACTGGAATACTGAAGATGAGTTAGAAATTGAAAATTTTCAATCTTCATCTTCAAATTTAACTGTTCCCAATGGAGAGGCTTTTTCTGGGTCTGGGGAAGCAAGCTCATCTCCAGGTTCATCAAATTCCAAGATGTTCGATCACTTTGTTGGAATGGGATTTTCTGAAAAATTGGTTTCGAAAGTAATTCAGGAACATGGGGAAGAAAATGCAGATTTACTTCTTGAAACGCTTCTCACATTGTCGGCTCTGGATAGTTCTCCTCAAAACAACAAGGAAATTGAATCAGACTTTTGCGCTTCAGATGTTGCAGGGAGCTGCTCTCTTGATGATTGCTCAGAAATAGATAGTTTCTCAGATGATGAGGAAAATACAAAACCTGTATCTGAGAACAATGTTAAATTGAAGACCTTGGTGAAGATGGGTTACAATGTTCAGGAGGCTTCAGTTGCCATGGAGAGATGCGGTGTGGACGCCTCACTCGCGGAGCTGACAGATTTTATATGCGCTGCTCAAATGGCCAAGGCTGCAGATGCCCTTATGGCCCCTGAAGAGAAGCCACAATACAGTAACCAAGCTAATAAAAAGAAGCGCAGTTATTATGAATGCGAGGTTTTGGGAAGGAAAAAGCCAAGGGATATTGTGAAGAAGACTTTAAACGAAGATGATGAGATGTTGCACCTTCCAAACCCAATGATAGGTTTTGGGGTTCCTACAGACGATTCATTCTCTATAACCCAGAGAACACTTCCTGAGGCTGCCATTGGGCCTCCTTACTTCTACTATGAGAATGTTGCACTTGCACCTAAGGGTGTTTGGCAGACCATATCTAGGTTCTTGTACGACATTGAGCCTGAGTTTGTGGATTCGAAGCATTTCTGTGCAGCTGCCAGGAAAAGGGGCTATGTTCACAATCTCCCCATCCAGAACAGATTTCCTCTTCTTCCGTTTCCAGCACGCACAATTCATGAGGCATTCCCCCTGACGAAGAAATGGTGGCCCTCTTGGGACCACAGGACCAAACTGAATTGTCTGCAAACAGCTTATGGCAGCGCAAAACTAACAGAGAGGATTAGGAAAGCTCTAGAAAACTATGAAGGGGATCCACCCCTGTCAGTCCAAAAGTATGTTCTTGATGAATGTCGTAAATGGAATCTAGTTTGGGTAGGAAGGAACAAGGTTGCCCCACTGGAGCCTGATGAGGTAGAAATGCTTTTGGGTTTCCCTAGGAATCACACTAGAGGAGGTGGAATTACTAGGAGTGACAGATATAAATCACTCGGCAATTCATTCCAGGTTGACACTGTGGCATACCACCTGTCAGTTCTTAAGGACTTGTACCCCAATGGCATCAATCTTCTATCTCTGTTTTCTGGAATTGGTGGCGCAGAAGTGGCTCTTTATCGGCTTGGCGTTCCTCTTAAGAATGTTGTTTCAGTTGAGAAATCAGAGGTAAATAGGAACATAGTCAGAAGCTGGTGGGAACAAACAAACCAGAAAGGAAATTTATTTGACTTGGATGATGTACAGCTGCTAGATGGTGCTCGGTTGGAGTACTTTATGAGCCTTTTTGGGGGTTTTGATCTTATTGTTGGTGGCAGTCCATGTAATAACCTAGCTGGTAGCAATAGGGTTAGCCGAGATGGTCTCGAGGGCAAAGAATCATCTCTCTTCTTTGATTACTGTCGCATTCTAGACTTGGTCAAAAATATGATGGCGAAAGCAGATTGTTTGCTGGACTATATTGCCAGTTCCCTTGCGATGGCTGCTACTGCTACGGCCTCTTCAGTGGGTCCAAGATATGCACCGCATGACCCAACCCTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACCGGTTATCTCTACTTTTGGAATCCCGAGACTAATGTCACCCAATACGAGAGGCCTACAAACTCAGCCCCCGTGCCGAAGTCTTCTTTAGTGCCTAGTTCTTCAGTCCAGGTATCACAAGGACCACGTCGGGACCACAGTCCTGATTTTAATGACAGGTATGGTAGAAGCAACGTTGGTGGATCAAATTCTGAAGCTGGATCTCGGAATCATCAGAATCCAAAAGGTGGGAGTCTTAGTTCTCATAATGTTCCAAATGGAATGCACATGACTGGAGATGTTAGTTCTTCTTTCAAAAGTCATGGATCATCAGATGCAGAAGTTGGATTAACCCCAGAGTCTTATTGGCGTTGCCATGAAATAACTGTTTCTGGAGATAATGTCCCTCCACCTTTCACGTCCTTTGGCTCTACTGGTTTTCCATCAGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCAATTCAGGCACAGTCATGGCCCATTGTTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGTTCCGGCAAAACCCTGGGATATTTAATTCCAGGATTCATCCATCTCAAACGTGTTGGTAATGACTCCAAATTGGGCCCCACTGTATTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAATCATCGAGAATTTCTTGCGCTTGTTTGTATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATCAACCGAGGAGCAGATATTGTGGTTGCTACTCCTGGCCGCTTGAATGATATCCTTGAGATGAGGAGAATTAGTCTTCATCAGGTGTCTTACCTAGTACTTGACGAGGCTGACCGTATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAAGTGCCTGCACGACGGCAAACCCTTATGTTTACTGCAACATGGCCCAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGATCAATCCTGTTCAGGTCAACATTGGCAATGTTGACGAGCTTGTTGCTAATAAGTCCATTACACAGCATATAGAAATATTGGCACCAATGGAGAAACACAGACGATTGGAGCAAATATTGCGGTCACAGGATCCAGGATCAAAAATTATTGTTTTTTGTTCTACCAAGAAGATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTTGCAACAGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGGGTCGTCGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTTCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCACACACCTTTTTTGGAGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTGGAAGGTGCAAATCAGCGGGTCCCACCAGAACTCCATGATTTGGCATTACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTCGTGGGGGGCGCAGTGATTCTGGATATGGGGGACGGGGTGGTGATTCTGGCTATGGGGGAAGGGGTGGGTGGGGAGCCACTACTGGTGGCCGAGGTGGAGGTGGAGGCCGTGGATTTGACTATGAGATGCAGAGGAATGATCGTACTTACTATGGTCAAGATGCGGATACTCATGAGAACTATGATAAAGGAAGGAGCCGTAGCAGGAGCCCTGATAGGAGTAGAAACTTGTGCCGTGATCGGAGCCGCAGTCGAAGTCCCAACAGGCATGAAAGGGCTGCACCACCTTCCCAAGGTTTTAGTTTTCACCACATAATGATGGAACGTAAAGGGGGCAGTGATCATGGCAAGAGCTTTGATCAAGGTAGAAACCGAAGTCGCAGCCCTGTTAAGCATGATAGGGCACCATCTGGCCGTGAACGTTCCCCAGGAGGATATAGTTTTCATCAAATGATGATGGAACGTCGTGAGGACAGAAGTTCAAGATTCAGTAGCGGTGGGTCAGACAGAAGTCCTCGTCAGGAGTGGGTTAGATCTCCCAGAAATAAGTTGGAGGATGGGAGATGTGGCGAAGAGGAGGAAGGGATGATTCCTGAAGGCAATGACCATGCTTCTTAG 4182 0.4582 MNILFAVWYCEVDFVTCSTLLGEEASTGAADGDNSGLESDNYDWNTEDELEIENFQSSSSNLTVPNGEAFSGSGEASSSPGSSNSKMFDHFVGMGFSEKLVSKVIQEHGEENADLLLETLLTLSALDSSPQNNKEIESDFCASDVAGSCSLDDCSEIDSFSDDEENTKPVSENNVKLKTLVKMGYNVQEASVAMERCGVDASLAELTDFICAAQMAKAADALMAPEEKPQYSNQANKKKRSYYECEVLGRKKPRDIVKKTLNEDDEMLHLPNPMIGFGVPTDDSFSITQRTLPEAAIGPPYFYYENVALAPKGVWQTISRFLYDIEPEFVDSKHFCAAARKRGYVHNLPIQNRFPLLPFPARTIHEAFPLTKKWWPSWDHRTKLNCLQTAYGSAKLTERIRKALENYEGDPPLSVQKYVLDECRKWNLVWVGRNKVAPLEPDEVEMLLGFPRNHTRGGGITRSDRYKSLGNSFQVDTVAYHLSVLKDLYPNGINLLSLFSGIGGAEVALYRLGVPLKNVVSVEKSEVNRNIVRSWWEQTNQKGNLFDLDDVQLLDGARLEYFMSLFGGFDLIVGGSPCNNLAGSNRVSRDGLEGKESSLFFDYCRILDLVKNMMAKADCLLDYIASSLAMAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSAPVPKSSLVPSSSVQVSQGPRRDHSPDFNDRYGRSNVGGSNSEAGSRNHQNPKGGSLSSHNVPNGMHMTGDVSSSFKSHGSSDAEVGLTPESYWRCHEITVSGDNVPPPFTSFGSTGFPSEILREVHNAGFSAPTPIQAQSWPIVLQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSKLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCACLYGGAPKGPQLRDINRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLINPVQVNIGNVDELVANKSITQHIEILAPMEKHRRLEQILRSQDPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAHTFFGDQDAKHASDLIKILEGANQRVPPELHDLALRGGGMNRSRRWGSGGRGGRSDSGYGGRGGDSGYGGRGGWGATTGGRGGGGGRGFDYEMQRNDRTYYGQDADTHENYDKGRSRSRSPDRSRNLCRDRSRSRSPNRHERAAPPSQGFSFHHIMMERKGGSDHGKSFDQGRNRSRSPVKHDRAPSGRERSPGGYSFHQMMMERREDRSSRFSSGGSDRSPRQEWVRSPRNKLEDGRCGEEEEGMIPEGNDHAS 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0474 1393 MobiDBLite consensus disorder prediction 56 82 - -
Lele05g0474 1393 CDD SF2_C_DEAD 1013 1142 - -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 678 705 - -
Lele05g0474 1393 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 794 822 IPR014014 GO:0003724
Lele05g0474 1393 SMART helicmild6 1053 1133 IPR001650 -
Lele05g0474 1393 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 288 617 IPR030380 GO:0006306
Lele05g0474 1393 SMART ww_5 649 682 IPR001202 GO:0005515
Lele05g0474 1393 Pfam C-5 cytosine-specific DNA methylase 494 608 IPR001525 GO:0008168
Lele05g0474 1393 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 282 486 IPR029063 -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 717 765 - -
Lele05g0474 1393 ProSiteProfiles WW/rsp5/WWP domain profile. 648 682 IPR001202 GO:0005515
Lele05g0474 1393 Gene3D - 1004 1174 IPR027417 -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 1229 1278 - -
Lele05g0474 1393 CDD WW 651 681 IPR001202 GO:0005515
Lele05g0474 1393 MobiDBLite consensus disorder prediction 678 767 - -
Lele05g0474 1393 SMART ultradead3 813 1016 IPR014001 -
Lele05g0474 1393 FunFam ATP-dependent RNA helicase RhlB 1003 1175 - -
Lele05g0474 1393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 825 999 IPR014001 -
Lele05g0474 1393 Gene3D - 772 1003 IPR027417 -
Lele05g0474 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1149 IPR027417 -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 1362 1393 - -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 1295 1327 - -
Lele05g0474 1393 Pfam Helicase conserved C-terminal domain 1025 1133 IPR001650 -
Lele05g0474 1393 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 945 953 IPR000629 -
Lele05g0474 1393 Gene3D Vaccinia Virus protein VP39 485 632 IPR029063 -
Lele05g0474 1393 Gene3D Vaccinia Virus protein VP39 283 374 IPR029063 -
Lele05g0474 1393 SUPERFAMILY WW domain 642 682 IPR036020 GO:0005515
Lele05g0474 1393 Pfam DEAD/DEAH box helicase 818 988 IPR011545 GO:0003676|GO:0005524
Lele05g0474 1393 ProSitePatterns WW/rsp5/WWP domain signature. 654 680 IPR001202 GO:0005515
Lele05g0474 1393 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 493 613 IPR029063 -
Lele05g0474 1393 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 38 615 - -
Lele05g0474 1393 MobiDBLite consensus disorder prediction 1171 1393 - -
Lele05g0474 1393 FunFam probable ATP-dependent RNA helicase DDX17 765 1002 - -
Lele05g0474 1393 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1028 1172 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0474 Lele-ChrLele05 2717187 2727994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0474 792 1171 Eukaryotic Initiation Factors Gene Family AT3G19760 33.506 1.97e-64 223