LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g0459	ATGGAGCATGTACCAGAAAAAAGATTTCCTCTCAATGCAAAAGATTATAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCACTGTGTATAGGGCACTGTGTGTGCCACTCAACAAAATAGTTGCCATTAAGGTTCTCGATCTCGAAAAGTGCAATAATGATCTGGATGGCATCAGGCGAGAGGTACAAACGATGAGTTTGATTGATCATCCAAATCTTTTACGGGCATATTGTTCTTTCACTGCTGGACACAACCTTTGGGTTGTGATGCCCTACATGTCTGGAGGATCCTGCCTTCATATAATGAAATCTGACTATCCTGAGGGATTTGAAGAGGCCGTTATTGCTACTTTGCTGCGGGAAGTTCTCAAAGCTCTTGTCTATCTTCATGCTCATGGACACATACATAGAGATGTAAAGGCGGGGAATATTTTGATTGATTCTGATGGTATGGTCAAATTAGCTGACTTTGGGGTGTCAGCATGTATGTTTGATGCTGGAGATAGGCAACGATCAAGAAATACTTTTGTTGGAACTCCTTGCTGGGCAGACATTTGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCGATGAAAGTTTTGCTTATGACGTTACAAAATGCTCCTCCAGGCCTTGATTATGAAAGAGACAGGAGGTTTTCTAAGTCATTCAAAGAGATGGTAGCAACATGCTTAGTGAAGGACCCAAAGAAACGGCCAACTTCAGAAAAACTTTTAAAACACCCTTTCTTCAAACATGCACGCTCCTATGAGTACCTAAGTCGAACTATTCTAGATGGCCTTGCACCTTTAGGAGATCGATTTAGGATTTTGAAGGCAAAAGAGGCTGATTTATTGGTGCAGAATAAGGCTTTTTATGAGGATAAAGAACAACTATCTCAGAAAGAATATATTCAAGGAATCAGTGCCTGGAATTTCAATCTTGAGGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATGCCAAATGCAGAAGAGCGGGATATGGATAAGAAGCTAAAAAACAAATATGATGATAATGGGGTTCCTGCAGAAGGGTCATTGGCAGTAACAACTAACGATTCAGATGCTAAACCCACATTGGATAAGGAGGATGGGTTCAGTGATCTTCTGCATTTGGAGAGTTCTCTTGCTTCATTTCCAACTAAACCTCTTGAAGCACTTAAAGGTTGTTTTGACATTTGCGATTATGATGCAAATAACACTGGTCTGAGGGATTTGGACCAGGATTATGGAAGAAACGAGAACGGAAGTTCTGGGCTTAGTTCAGTGCCACAAAATGTTTTAACTGAGCATAAAAAGTATTTGAGTGGTTCCTTGGTACCTGATAATTTTCTCTCCCCTAAAAAGGTTGTTACTGATGGGGACAGGGATTACTTGCAAGTGAAATATAATTCTGATCGGAATCATAGTGGTCCATTGTTATATCGTCAGAAGAGAGACACCAACAACCACCTTGCATCCGTTGGTGATGCGTCAGAAGGAGCAGTTATCCAGTGCAAAGGACGGTTTAAGGTTACTTCAACAGATCTTAGTCCTAAGGGTCCTTCAAACTGCACTTTCGGCCTGGTTTCTGGAGGTTCTACTGGCCTACCAAATCAGAACTCTACAGTTGCTTCTATTCTTCCATCACTGCAGTTCATTTTGCAACAGAACAGCATGCAAAGGGAAGAACTTATTAAATTAATCAAGTATGTGGAGCAATCTTGTGGCAAGAATACTGAATCAGCAGAGGCAGGGATAGTTGATATTTTGCAGGTACCACCTGCAACAAATAAGGAGAGAGAGCTGCGTGAGAAGGTGATTCAATTACAACAGAGTATTGGGAGTCTTGTGGAGGAAGTGCAAAGACAAAAAATGAAAAATGCCCAGTTAGAGAAGCAGTTGAACTCTATGGCTAACAGAATGGAAGAGTGA	1977	0.4102	MEHVPEKRFPLNAKDYKLYEEVGEGVSATVYRALCVPLNKIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAYCSFTAGHNLWVVMPYMSGGSCLHIMKSDYPEGFEEAVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSDGMVKLADFGVSACMFDAGDRQRSRNTFVGTPCWADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRRFSKSFKEMVATCLVKDPKKRPTSEKLLKHPFFKHARSYEYLSRTILDGLAPLGDRFRILKAKEADLLVQNKAFYEDKEQLSQKEYIQGISAWNFNLEDLKSQAALIQDDDMPNAEERDMDKKLKNKYDDNGVPAEGSLAVTTNDSDAKPTLDKEDGFSDLLHLESSLASFPTKPLEALKGCFDICDYDANNTGLRDLDQDYGRNENGSSGLSSVPQNVLTEHKKYLSGSLVPDNFLSPKKVVTDGDRDYLQVKYNSDRNHSGPLLYRQKRDTNNHLASVGDASEGAVIQCKGRFKVTSTDLSPKGPSNCTFGLVSGGSTGLPNQNSTVASILPSLQFILQQNSMQREELIKLIKYVEQSCGKNTESAEAGIVDILQVPPATNKERELREKVIQLQQSIGSLVEEVQRQKMKNAQLEKQLNSMANRMEE	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g0459	658	MobiDBLite	consensus disorder prediction	354	380	-	-
	Lele05g0459	658	Pfam	Protein kinase domain	16	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele05g0459	658	SMART	serkin_6	16	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele05g0459	658	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Lele05g0459	658	Gene3D	Phosphorylase Kinase; domain 1	5	92	-	-
	Lele05g0459	658	FunFam	Serine/threonine-protein kinase BLUS1	5	93	-	-
	Lele05g0459	658	CDD	STKc_OSR1_SPAK	14	262	-	-
	Lele05g0459	658	SUPERFAMILY	Protein kinase-like (PK-like)	13	283	IPR011009	-
	Lele05g0459	658	Coils	Coil	628	655	-	-
	Lele05g0459	658	Gene3D	Transferase(Phosphotransferase) domain 1	97	277	-	-
	Lele05g0459	658	FunFam	serine/threonine-protein kinase OSR1	97	278	-	-
	Lele05g0459	658	ProSiteProfiles	Protein kinase domain profile.	16	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele05g0459	658	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	6	639	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g0459	Lele-ChrLele05	2628401	2638065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g0459	1	655	MAP Kinase Kinase Kinase Kinase	AT5G14720	63.517	0.0	885

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Lele05g0459		Pkinase	1.9e-48	CL0016