Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0422 ATGAATACCCGAAGGCAACCGTCGCAGGTGAAAGGGAGAAAATCGAGGAGGTTGCAATGTTTGTGTTGGCAGTGTCTTCCTAAATCAGGGAAAGCTTCAGTTCCGCCCGCCATTGATGGGTTTGTGAAGCTAATGTTGCTGCGGAGACTGCCTTTGAACTTCTCAACGATGGGCAAAAACAAGGAGTTTCTGGAGTCTGCGAGTTTCGTGGTCCACGGATCCTTACAGAAAAATTGGGCTTCTCACAAAGCAACAGAAGCAGAGAAATTTAACGACGTCATCGCTCCCGGCCGTAAATGGAAGATCTTCTACAGGTCATCGTCGGCCGTCCATTCCAAACAATCGAAACATGGAAAGAAACAGCCCCCGGAAGAATTTCTCTGTCCCATATTAGGGTCTCTCATGGCCGACCCAGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCCGTTCAATCTTGTAAAAATTTAAAGTTCACACCACGCCTCTCCGATGGCTCCACCCCCGATTTTTCTACCGTAATTCCCAACCTTGCCCTTAAATCTGCCATTGCTAAATGGTGCCAGAACTCCGCCAACCTAATCCCCGAGCCGCCTGACGTAGCTTCTTCTGAGAAGTTCGTTCATAGACTAATGACGACGAAGACCCAGAAGACAGATTCAAGTATCCAGAACACGCAGAAGGTAGTAATCACAGAGGAAGAGCTGATTCAAGGAATGAAGGAGAACCCACCTGTGAATTTTAATCACGCAGCGACCGAGGTAACTCAACGGCCAGCTCACCCTTACTGGAACTCAGAGGAATCGGCGGGTTCCTCTCCTGCATCTCCGCCTATGCAACTTTCAACTCGAACAAGCTGCTATTCTTCCGCCTCATCCTCAGAAATCGAATTCATTATTCCTAGCTCACCTGAAGAAGAGAATATCTTGGCCAAGTTAAAAAGCTCACAGGTGTCCGAGATCGAAGAAGCCGTTGTTTCACTAAGAAAGCTCACGAAAACTAGAGAGGATACGAGGGCCCATCTCTGCAATCCTCGGTTACTCTCCGTCGTTCGATCGTTGATCGTGTCCAAGCACACTAATATACAGGTGAATGCGGTCGCAGCTCTGGTGAACCTCTCATTGGAGAAAGTGAACAAAGTAAAGATACTCCGGTCCGGAATCGTTCCTCCGTTGATTGACTTATTGAAGGGGGGATCCCCTAAGGTGCAAGAACACGCTTCCGGCGCACTCTTCAGCTTGGCCACTCACGACGATAACAAGACTGCAATCGGCGTGCTGGGTGCTCTGCCGCCACTGCTCCACTTGCTTCAATCCGAGAATGGGCGAACGCAGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGGTAAAACTCGGGTCGGTTCCGATCCTAATGAGCATGTTAAAGTCGGGTAAGATGAGGGGTCACGTGCTACTCATACTATGCAACTTGGCGTCTTGTGGGGACGGCCGGGCGACGATGTTGGATGCGCAGGCGGTGGATTGCTTGGTGGAGTTGCTGAGCGGTAGCGAGTTGGGTTCCGGGTCAACCCGGGAGAGCTGCGTGGCGGTGCTGTATGCCCTGAGTCACGGAGGGTTGAGGTTTAAAGCGGTGGCAAGGGCGGCGGGGGTGGTGGAGGTGTTGACGATGGAGGAGAAGGGGGGAAGCCAGAGGGCTAGGGAGAAGGTGAAGAGGATACTGGAGATGATGAGGGCGAAGGAGGAAGCCGAAGAGGACGAGGACGACGTCGACTGGGAGGCGCTTCTTGACTCGGGTTTGAGTAGTCTGAGTCGGGCCTGTCATGAGTCGAGCGAGTTATGA 1854 0.5216 MNTRRQPSQVKGRKSRRLQCLCWQCLPKSGKASVPPAIDGFVKLMLLRRLPLNFSTMGKNKEFLESASFVVHGSLQKNWASHKATEAEKFNDVIAPGRKWKIFYRSSSAVHSKQSKHGKKQPPEEFLCPILGSLMADPVIVSSGHTFERVSVQSCKNLKFTPRLSDGSTPDFSTVIPNLALKSAIAKWCQNSANLIPEPPDVASSEKFVHRLMTTKTQKTDSSIQNTQKVVITEEELIQGMKENPPVNFNHAATEVTQRPAHPYWNSEESAGSSPASPPMQLSTRTSCYSSASSSEIEFIIPSSPEEENILAKLKSSQVSEIEEAVVSLRKLTKTREDTRAHLCNPRLLSVVRSLIVSKHTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDLLKGGSPKVQEHASGALFSLATHDDNKTAIGVLGALPPLLHLLQSENGRTQNDSALALYHLSLVQSNRTKMVKLGSVPILMSMLKSGKMRGHVLLILCNLASCGDGRATMLDAQAVDCLVELLSGSELGSGSTRESCVAVLYALSHGGLRFKAVARAAGVVEVLTMEEKGGSQRAREKVKRILEMMRAKEEAEEDEDDVDWEALLDSGLSSLSRACHESSEL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0422 617 FunFam RING-type E3 ubiquitin transferase 103 194 - -
Lele05g0422 617 Pfam Armadillo/beta-catenin-like repeat 419 457 IPR000225 GO:0005515
Lele05g0422 617 Pfam Armadillo/beta-catenin-like repeat 380 416 IPR000225 GO:0005515
Lele05g0422 617 SMART arm_5 498 541 IPR000225 GO:0005515
Lele05g0422 617 SMART arm_5 459 497 IPR000225 GO:0005515
Lele05g0422 617 SMART arm_5 377 417 IPR000225 GO:0005515
Lele05g0422 617 SMART arm_5 418 458 IPR000225 GO:0005515
Lele05g0422 617 SMART arm_5 336 376 IPR000225 GO:0005515
Lele05g0422 617 CDD RING-Ubox 127 159 - -
Lele05g0422 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 197 IPR013083 -
Lele05g0422 617 SMART Ubox_2 125 188 IPR003613 GO:0004842|GO:0016567
Lele05g0422 617 Coils Coil 567 591 - -
Lele05g0422 617 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Lele05g0422 617 MobiDBLite consensus disorder prediction 264 286 - -
Lele05g0422 617 Gene3D - 306 583 IPR011989 -
Lele05g0422 617 PANTHER U BOX DOMAIN-CONTAINING 98 582 - -
Lele05g0422 617 SUPERFAMILY RING/U-box 112 197 - -
Lele05g0422 617 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 425 IPR000225 GO:0005515
Lele05g0422 617 FunFam RING-type E3 ubiquitin transferase 305 581 - -
Lele05g0422 617 Pfam U-box domain 123 191 IPR003613 GO:0004842|GO:0016567
Lele05g0422 617 SUPERFAMILY ARM repeat 308 572 IPR016024 -
Lele05g0422 617 ProSiteProfiles U-box domain profile. 121 195 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0422 Lele-ChrLele05 2397334 2403099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0422 119 609 U-box Gene Family AT5G40140 54.141 6.57e-174 503