Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0403 ATGAAGTTCTGCAAGACCTACCAGGAGTACATGCAAGGGCAGGAGAAGAAACTACCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAATGCAGAGTAGACTATCAACCCCAGAATCAGAATGCCCTCATTGACGAAGCTCACGAACACACCGTCCGAACATGCCCCGATCATTGCCCAGTGTGCGATGGGACTTTCTTCTCTTCACTTCTCAATGAAATGTCAGAAATAGTAGGCTGCTTTAATCAGCGAGCGCAGAAATTATTAGATCTACATCTTGCTTCTGGCTTCAGAAAGTACTTGTTTTGGATCAAAGGAAAATTGCGAGGAAACCACACCGCTCTCATTCAAGAAGGCAAGGATCTGGTTACCTATGCACTTATCAATGCCGTTGCTATTCGAAAAATACTCAAGAAATATGACAAGGTTCATTATTCGAAGCAAGGCCAATTGTTCAAGTCTCAAGTCCAGAGTATGCATATGGAAATTCTTCAGAGTCCTTGGTTTTGTGAGCTGATGGCCTTGCACATCAATTTAAGGGAAACCAAGCCCCAGTCCCGGCACGCAGCCGTGTTGTTTGATGGATGTTCTCTTGCATTCAAGGATGGAAAACCATCAATCACTTGTCAGCTCTTTGATTCAATCAAACTTGATATTGACTTGACCTGTTCAATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCACCTATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTCACTATTGTTGATGGACTCAAGGAAGCAAATCCTAAAGCAAAATGTCCTCTCTGCCGAGAGAGTGGAGTTTATGAAGGTGCTATCCACTTGGAAGAGTTGAACATTCTGTTAGGGCGAAGGTGTCAAGAATACTGGGAAGAAAGACTTCAGGCGGAGAGGGCTGAGAGGCTTCAACAGATTAAAGAGCATTGGGAATCAGAGTGCCGGGCTGTATTGGGCGTCTAA 990 0.4444 MKFCKTYQEYMQGQEKKLPGVGFKKLKKILKKCRVDYQPQNQNALIDEAHEHTVRTCPDHCPVCDGTFFSSLLNEMSEIVGCFNQRAQKLLDLHLASGFRKYLFWIKGKLRGNHTALIQEGKDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQVQSMHMEILQSPWFCELMALHINLRETKPQSRHAAVLFDGCSLAFKDGKPSITCQLFDSIKLDIDLTCSICLDTVFDPVSLTCGHLFCYMCACSAASVTIVDGLKEANPKAKCPLCRESGVYEGAIHLEELNILLGRRCQEYWEERLQAERAERLQQIKEHWESECRAVLGV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0403 329 SUPERFAMILY RING/U-box 218 277 - -
Lele05g0403 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 IPR033326 -
Lele05g0403 329 CDD SPX_BAH1-like 2 152 - -
Lele05g0403 329 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Lele05g0403 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 327 IPR013083 -
Lele05g0403 329 SMART ring_2 225 273 IPR001841 -
Lele05g0403 329 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Lele05g0403 329 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Lele05g0403 329 Pfam Zinc finger, C3HC4 type (RING finger) 222 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0403 Lele-ChrLele05 2289758 2291630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0403 222 283 C3H Transcription Factor Family AT4G28270 41.791 2.13e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0403 05 2289758 2291630 Lele05g0403 05 2289758 2291630 ECH
Lele05g0403 05 2289758 2291630 Lele07g0422 07 2375973 2378205 hybridization