Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0398 ATGAGTAGACGTTCGAGCAGAACCGTCTACGTTGGGAATTTGCCGGGTGATATTCGCGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCACATTGATTTGAAGGTTCCACCCAGACCCCCTGGGTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGCGGTCGTGATGGTTATGATTTTGATGGACATCGGTTAAGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCCAGAGATCGATATAGTAGTCACAATAATGGTCGAGGTGGACGTGGGGTTTCGAGGCGCTCTGAGTACCGTGTACTAGTGACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGCGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGCAGAGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAGAGCTTATGTTCGTGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGGCGATCTTATTCTAGGGGGAGAAGTTATAGCCGCAGTCGTAGCCGTAGTTACAGTCGAGGGCGTAGTCGGAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAGATCTTCTTCAAGGTCTGTTTCACGCTCACGTTCTCCCTCAAAGTCAAGGTCCCGTTCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCTATTTTAG 903 0.4574 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHNNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGRSRSKSPKGKSSQRSPARSSSRSVSRSRSPSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLLF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0398 300 MobiDBLite consensus disorder prediction 73 107 - -
Lele05g0398 300 Gene3D - 2 109 IPR012677 -
Lele05g0398 300 MobiDBLite consensus disorder prediction 206 228 - -
Lele05g0398 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lele05g0398 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Lele05g0398 300 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Lele05g0398 300 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Lele05g0398 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lele05g0398 300 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Lele05g0398 300 CDD RRM2_SF2_plant_like 111 186 - -
Lele05g0398 300 MobiDBLite consensus disorder prediction 229 259 - -
Lele05g0398 300 Gene3D - 110 188 IPR012677 -
Lele05g0398 300 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lele05g0398 300 SMART rrm1_1 112 183 IPR000504 GO:0003723
Lele05g0398 300 CDD RRM1_SF2_plant_like 8 78 - -
Lele05g0398 300 MobiDBLite consensus disorder prediction 73 108 - -
Lele05g0398 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lele05g0398 300 MobiDBLite consensus disorder prediction 186 259 - -
Lele05g0398 300 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0398 Lele-ChrLele05 2262078 2266851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0398 8 195 Eukaryotic Initiation Factors Gene Family AT4G34110 24.365 2.57e-06 47.0