Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0374 ATGGTCTCGCTGAAGCTCCAGAAGCGGCTCGCCGCCAGTGTCCTCAAGTGCGGCAGAGGCAAAGTTTGGCTTGACCCAAATGAAGTCAACGAAATATCCATGGCGAATTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGTTTCATCATACGGAAGCCAACCAAGATTCACTCCCGTTCACGTGCCCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGGAAGGGTACTAGAGAGGCACGACTTCCTACAAAAATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAAATCGACAAGCATATGTACCATGACATGTACATGAAAGTTAAGGGTAATGTCTTCAAGAATAAGAGAGTCCTAATGGAGAGCATTCACAAATCTAAGGCAGAGAAGGCAAGAGAGAAGACTTTGAGCGATCAGTTCGAGGCTAAGCGTGCAAAGAACAAGGCAAGCCGGGAAAGGAAAATCGCTAGGAGGGAGGAGCGATTGGCTCAGGGTCCCGGTGAGAAACCTGCTGCAGCACCGATTGCACCACCTGCGACGGCATCTCAACCATCAAAAAAATCCAAGTGA 627 0.4928 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPAAAPIAPPATASQPSKKSK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0374 208 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lele05g0374 208 MobiDBLite consensus disorder prediction 57 79 - -
Lele05g0374 208 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lele05g0374 208 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lele05g0374 208 MobiDBLite consensus disorder prediction 149 208 - -
Lele05g0374 208 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lele05g0374 208 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lele05g0374 208 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele05g0374 208 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele05g0374 208 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lele05g0374 208 FunFam Ribosomal protein L19 1 56 - -
Lele05g0374 208 MobiDBLite consensus disorder prediction 57 85 - -
Lele05g0374 208 MobiDBLite consensus disorder prediction 149 184 - -
Lele05g0374 208 Gene3D - 57 188 - -
Lele05g0374 208 FunFam Ribosomal protein L19 57 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0374 Lele-ChrLele05 2139539 2141067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0374 1 208 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.615 1.02e-126 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0374 05 2139539 2141067 Lele05g0374 05 2139539 2141067 ECH
Lele05g0374 05 2139539 2141067 Lele07g0391 07 2215905 2217441 hybridization
Lele05g0374 05 2139539 2141067 Lele08g0197 08 1206395 1207922 hybridization