Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0370 ATGCATGATATGTGGCTCCGCTTGAGGCACTCCTTGTGTGAAGACAACTCCCGCCAAGAGCTTCACCACACCCCCAAACGTCAGCACCACCTCCCCCAGAACCTTCTAGAACCTTCTTTTCCGATCGGCCAGATATCTGACTTCGGTGGCTGTTATTACTCGGTGCTTGGGATAAGCAAGCAGGCCATCGATTGTGAAATCCGTGGCGCTTATCTTAAGATGGCTCTGAAATGGCATCCGGACAGGTGGACTAAAGACCCAAAGCTTGCAGTAGATGCTAAAGGACGGTTTAAACAAATTCAAGAGGCTTATTCGGTTTTGTCTAATAAAGGCAAGAGAACCGTATATGATGCTGGCTTGTTTGGTCTGATTGGAGACGACGACGACGACGAGGGATTTGTTGATTTCATGCAAGAAATGGTCTTCATGACGGAGAAAGAGAGCCCCAAGGAATACACGCTGGAGGATCTTGAGAGACTGCTAATGGACATGATGGAAGGCGGAACGGGGAAATCTGAGTTTCAATCCACCACTACTCCCACAAAAAAGATTCCTGACCTAAGCTTCCCTGCCTCCATCTTCCTTCCATCAGGCTGTTCCAGTTGTTCGACTTCTCCCACTCCCGGCGCCTTCCACATCCTTGGTTGCTCACTGCGCCCTCATTCAAAAGGGCAGATGATGGCCTTCTCCGCTATTTCGCGGCGTTTATCGGGTGTATCATCGGTGGCGCAGCCTTCGGTGGCCTTGCGTCTTGCTCTCTCTTCTAGATCGTATTCTACTTCGTTTAGAGAAGAAAGAGATACTTTTGGACCAATTCAAGTCCCATCCGACAAATTATGGGGCGCGCAAACTCAAAGGTCGTTGCAGAATTTTGATATTGGTGGCGAACGTGAACGAATGCCTGAACCCATTATTCGCGCCTTTGGCATATTAAAAAAAGCCGCTGCTAAGGTGAACTTAGAATATGGCCTTGATCCCACCATTGGGAAAGCTATAATGCAGGCAGCACAAGAAGTGGCCGAGGGAAAGCTAAATGACCATTTTCCTCTAGTTGTATGGCAAACTGGCAGTGGCACTCAAAGCAACATGAATGCTAATGAGGTTATTGCAAACAGAGCAGCTGAGATTCTTGGTCATAAGCGTGGTGAAAAGTTTGTGCACCCGAATGACCATGTCAATAGATCACAATCTTCTAATGACACATTCCCAACTGTAATGCACATTGCAGCTGCAATGGAAATAAATTCAAGACTAATTCCAAAACTGAAAACCTTACATTCTTCACTACATGCCAAGATGGTTTGGTTTGGTTTCATTCTAGTCGTATTGATACATGTAGGAATGATAAAAGAGAATAAAGCCCTCCAATTTTCCCAGTCTGTTGAATTCAAAGATATTGTGAAGATTGGGCGCACCCATACTCAAGATGCAACTCCATTAACTCTTGGGCAGGAGTTTAGTGGCTATACTACACAAGTGAAGTATGGAATTGATAGAGTGATGTGCACTTTGCCCCGAATTTATCAGGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTAACAATGGTCTGTGCACAGTCACTAATGCTTGTCACATCCTTGAACCCACGCACAAAGAGGGAACCACTCTTAAGGAATCTGCGTTGA 1647 0.4608 MHDMWLRLRHSLCEDNSRQELHHTPKRQHHLPQNLLEPSFPIGQISDFGGCYYSVLGISKQAIDCEIRGAYLKMALKWHPDRWTKDPKLAVDAKGRFKQIQEAYSVLSNKGKRTVYDAGLFGLIGDDDDDEGFVDFMQEMVFMTEKESPKEYTLEDLERLLMDMMEGGTGKSEFQSTTTPTKKIPDLSFPASIFLPSGCSSCSTSPTPGAFHILGCSLRPHSKGQMMAFSAISRRLSGVSSVAQPSVALRLALSSRSYSTSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGERERMPEPIIRAFGILKKAAAKVNLEYGLDPTIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAAMEINSRLIPKLKTLHSSLHAKMVWFGFILVVLIHVGMIKENKALQFSQSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVMCTLPRIYQGKVNPTQCEALTMVCAQSLMLVTSLNPRTKREPLLRNLR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0370 548 Gene3D Fumarase/aspartase (Central domain) 395 443 - -
Lele05g0370 548 Gene3D DnaJ domain 44 129 IPR036869 -
Lele05g0370 548 Gene3D - 263 394 IPR024083 -
Lele05g0370 548 SUPERFAMILY L-aspartase-like 262 508 IPR008948 GO:0003824
Lele05g0370 548 CDD DnaJ 51 109 IPR001623 -
Lele05g0370 548 Pfam DnaJ domain 52 117 IPR001623 -
Lele05g0370 548 SMART dnaj_3 50 112 IPR001623 -
Lele05g0370 548 PANTHER ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE 252 509 IPR005677 GO:0004333|GO:0006106|GO:0045239
Lele05g0370 548 Gene3D Fumarase/aspartase (Central domain) 448 510 - -
Lele05g0370 548 Pfam Lyase 459 507 IPR022761 -
Lele05g0370 548 Pfam Lyase 270 434 IPR022761 -
Lele05g0370 548 ProSitePatterns Nt-dnaJ domain signature. 97 116 IPR018253 -
Lele05g0370 548 ProSiteProfiles dnaJ domain profile. 51 120 IPR001623 -
Lele05g0370 548 PRINTS DnaJ domain signature 53 71 IPR001623 -
Lele05g0370 548 PRINTS DnaJ domain signature 92 112 IPR001623 -
Lele05g0370 548 PRINTS DnaJ domain signature 71 86 IPR001623 -
Lele05g0370 548 SUPERFAMILY Chaperone J-domain 51 123 IPR036869 -
Lele05g0370 548 FunFam Fumarate hydratase, mitochondrial 263 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0370 Lele-ChrLele05 2124633 2132336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0370 51 118 C2H2 Transcription Factor Family AT1G74250 42.029 1.70e-09 58.5