Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0366 ATGGCCACTAGAAATCGAACTGTACTATTTAGAAAACACAGAGATGCCGTCAAGAGGGTGCGAGCCCCTCTATCTTCCTCAGCTTCCGGTTCCGGCGGTCCCGTTATTGAAATGGTGAGCACTTCACTTCTTCGTTCGAATCAATCTTCATATGCACCTCTAAGCACCGAAGATCCAGGCCCTTCGAGATGTTTTGAATCTCTAATGGCCTATAATGAAGGGATGAAGCAGATGTATGCAGTTCAAGTTTGCTACATAGGTAAAGTTATGCCTTCAACATTTGAATTTTCTGCTTCTTTAACAATCAGAAATTGTGCCTTGGCTTTCAGAGATGCATTTACTGTGGGGTTGCCACCAGATTGGGTAGATGATTCTGAAGAAATGGCTGCAAATATACAACATGCTCAGGGTAAAATGTCTGAGCTAGTCAAACTTCATGCAAAAGCATTAATGCCCTCTTTTGATGATGGTAAAGAAGATCAACAACAGATTGAGGTTCTCACCCGGGAGATTACAACTCTCTTGAGAAAATCTGAGATGAAGCTAAAAAGACTTTCTGCCACTGGCGGGTCTTCTGAGGATTCAAACATTAGAAAAAATGTTCAGCGCTCTCTTGCTACAGACCTTCAGAACCTGTCAATGGACCTTCGTCGAAAGCAGTCACAATACTTGAAACGATTGCAGCAGCAAAAGGAGGGATATGACGGGGTTGACTTGGAGATGAATGCAAATGGGTATAAATTTGGTTTGCAGGATGATGGATTCAGTGATGTGGTCACTAAATCAGTGAATGAACTGGCTCAGATCATGAAGGACCTCTCTGTTCTTGTGATAGACCAGGGAACAATTGTGGATAGAATAGACTACAACATTCAGAATGTTGCTACGTCCGTTGAAGAGGGCTTTAAGCAGTTGGAGAAGGCTGAGAGAACACAGAAAAAAGGAGGAATGGTTATGTGTGCAACGGTGCTTGTTATAATGTGCTTCGTTATGCTAGTCCTCTTGATACTCAAGAATTTGTCACGATGGTCTGAGGGTTTGTCTTTGGGGGAGGCCCTTACAATTATCAAAAGGATTGTCAACTTCTTGAAAGGAAGAGGGTGTGATGGTGTTTGGCATATGCAAATATTCTCTCATTCATTCTTTATCTGCCTCCCCGTAACCCTCCAGTTGCACACTCTTTTGGAGCTTAGTCACAAAAGTGTTCTCATTGTTCATGACGTCAGCTATTGGGGTCAAAAACAAAAACTTAAAGATGAAGATAGCCAGATATCTGACACGGAGCCCCTGCCGTTAACTTCTGTGGCAAAGTTCAAGTTGGATAAAGGGCTTTATCTTCTGAAATCGTTTGAAGCACCAAACCATACATACGACTTTTGTCGCATTCGTGGGCTCTTTGAAACAAAAAGGGACATTAGAGATGTGTCTGTCCCAAAGATGGATTGGGCTGAATCAGCACTCAAGTGCTCCCAAACCCAAAGACCAAAGAAAATCTATGAATATGATTCAGTAGTAACAGAAGAACAGTCAATATTGAAAGTTGCAGGCAAGTCCAAGTACCGTATTGTAGTTGCAATTAAAGTAAGCAGCAAGCAAGCTGTTCTCCATTTATAA 1614 0.4213 MATRNRTVLFRKHRDAVKRVRAPLSSSASGSGGPVIEMVSTSLLRSNQSSYAPLSTEDPGPSRCFESLMAYNEGMKQMYAVQVCYIGKVMPSTFEFSASLTIRNCALAFRDAFTVGLPPDWVDDSEEMAANIQHAQGKMSELVKLHAKALMPSFDDGKEDQQQIEVLTREITTLLRKSEMKLKRLSATGGSSEDSNIRKNVQRSLATDLQNLSMDLRRKQSQYLKRLQQQKEGYDGVDLEMNANGYKFGLQDDGFSDVVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFKQLEKAERTQKKGGMVMCATVLVIMCFVMLVLLILKNLSRWSEGLSLGEALTIIKRIVNFLKGRGCDGVWHMQIFSHSFFICLPVTLQLHTLLELSHKSVLIVHDVSYWGQKQKLKDEDSQISDTEPLPLTSVAKFKLDKGLYLLKSFEAPNHTYDFCRIRGLFETKRDIRDVSVPKMDWAESALKCSQTQRPKKIYEYDSVVTEEQSILKVAGKSKYRIVVAIKVSSKQAVLHL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0366 537 SMART tSNARE_6 245 308 IPR000727 -
Lele05g0366 537 CDD SNARE_syntaxin16 259 307 - -
Lele05g0366 537 Gene3D - 254 340 - -
Lele05g0366 537 Gene3D - 118 243 - -
Lele05g0366 537 PANTHER SYNTAXIN 125 327 IPR045242 -
Lele05g0366 537 Pfam SNARE domain 282 334 IPR000727 -
Lele05g0366 537 SUPERFAMILY t-snare proteins 117 301 IPR010989 GO:0016020|GO:0016192
Lele05g0366 537 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 259 308 IPR000727 -
Lele05g0366 537 SMART SynN_4 112 228 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0366 Lele-ChrLele05 2088487 2093860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0366 1 340 SNARE and Associated Proteins AT4G02195 55.978 9.63e-129 377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0366 05 2088487 2093860 Lele05g0366 05 2088487 2093860 ECH
Lele05g0366 05 2088487 2093860 Lele06g0183 06 1117385 1124672 ECH
Lele05g0366 05 2088487 2093860 Lele07g0384 07 2168058 2172196 hybridization
Lele05g0366 05 2088487 2093860 Lele08g0190 08 1155960 1161742 hybridization