Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0361 ATGGCTTTCATCTTCTTCACGCTCGCTCTCTCCGTCTCCTTGTCTTCATCCACCACCACTGTTTCATCTGTTTCCACTGTCGCTAAAGATCAAGTATCCTGCACCATGTGCACAGAGTGTGAAAATCCCTGCAAACCCCTTCCCCCGCCCCCACCGATGATTGAGTGCCCACCACCTCCACCACCTCCCGTGGTGGAGTGCCCACCTCCACCCTCGCCCCCACTGCCTCCGCCGCCTGCCCCACCAACCGTGGTTGAATGCCCACCCCCTCCAGCTCCATCATGTAATCCAGGTCCATGTGAACCACTTCCACAGTCGCCGCCACAGTGTCCTGGCGGACCCAATTGCAGGCCTCCGCCAATGTGTCCTGGGTGGCCTAATTGCAGGCCAATGCCGCCGTGGATGACACCCGGAATATCGTTCCCAATATACCAGCCAGCTGATGATGAGAACCACGCCGGAAGGGTGAAGGCGTTTGCAGCGTTCGGGGTCTCAATGCGGTCCTTGATGTGGGTGGCGTTTCTCTGCCTTCCATATTATTACTTACACTGTGATCGCAGTAGTAAACCGACTAAAATAGGGACAAGCGATGATTGGAGTCCAAATAAGGTTGTGCATAAAGCAGGATTCTTGAAGGTGAGCATTACCTTGCATCTTTGGCTCTCATCCTCCACCATGGCCAAAGCCAATGCTAAGGAAAAATCCACTTCCGCTGCTCACCACCCTCTCTATTTTCATATGATATCGGACGCCATTTCTACGCTGAACGATCGCACGGGTTCCAGTCAGCAGGCAATTGCCAAGTTCATCGAGGACCAACACAAGCCACTGCTTCCCCCAAATTTCAGGACACTCCTCTCTGTTCAACTCAAGAAGTTTGTCAAGTCGGAGAGGCTGTTCAAGGTCAAGAATTCCTTCAAGATCTCCTCCTCGGAGAAAAACAAGACCGCCAAACCAAGTAAGAAGGGTGGGATGCCTGCGCAGAAGGCTGCCAAGAAGATAACAGAGAAGGGGCTGAAGACCAAGAGGCTGAGTCACGTGAAGACGCCGGAGGCTCTCCAGAACGCCCACAAGGATACTAAGAAGAAGCCGATAGCCTCGTCGGCTGGGAAAGACCGGAAAGTGAAGCGCCTGAGTCAGGTTAAGACTCCCGACGCAATGAAGAAGAAGACCAAAGTTACCCCTATGAAGAGGAAGACTACTTACACTTCCACACCCATCAAGTCTACCAGGCCTGCGAAGAAGGCCAAGAAATAG 1257 0.5306 MAFIFFTLALSVSLSSSTTTVSSVSTVAKDQVSCTMCTECENPCKPLPPPPPMIECPPPPPPPVVECPPPPSPPLPPPPAPPTVVECPPPPAPSCNPGPCEPLPQSPPQCPGGPNCRPPPMCPGWPNCRPMPPWMTPGISFPIYQPADDENHAGRVKAFAAFGVSMRSLMWVAFLCLPYYYLHCDRSSKPTKIGTSDDWSPNKVVHKAGFLKVSITLHLWLSSSTMAKANAKEKSTSAAHHPLYFHMISDAISTLNDRTGSSQQAIAKFIEDQHKPLLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISSSEKNKTAKPSKKGGMPAQKAAKKITEKGLKTKRLSHVKTPEALQNAHKDTKKKPIASSAGKDRKVKRLSQVKTPDAMKKKTKVTPMKRKTTYTSTPIKSTRPAKKAKK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0361 418 CDD H15 238 322 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0361 418 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 240 310 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0361 418 MobiDBLite consensus disorder prediction 308 418 - -
Lele05g0361 418 PANTHER HISTONE H1 228 399 - -
Lele05g0361 418 PRINTS Histone H5 signature 227 248 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0361 418 PRINTS Histone H5 signature 254 271 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0361 418 PRINTS Histone H5 signature 379 398 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0361 418 MobiDBLite consensus disorder prediction 333 391 - -
Lele05g0361 418 Gene3D - 235 323 IPR036388 -
Lele05g0361 418 SUPERFAMILY "Winged helix" DNA-binding domain 239 322 IPR036390 -
Lele05g0361 418 SMART h15plus2 238 305 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0361 418 Pfam linker histone H1 and H5 family 241 308 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0361 Lele-ChrLele05 2066938 2070966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0361 242 308 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 7.51e-09 54.7