Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele05g0347 | ATGTGGCCAATGGTGTCGGAGTCGCCGGACAAGGAATATACGTGTCAAGTGGATGGGATGGACATGTGGAACAGCAGAGGAGGGAGCGCCAATTGCCGGGGAAAAGGCAGGGGTGTCCCCACAGAGATGCCGACCAAAGGGGCTCAACTTCAAAGAATATGCCACGAAGAAGAATTTGAGAGCTCCGAAAGCCTCGAAGCTCCCTGTTCTTGTTCTGGCACCGTTAAGTTTGCTCATAGAGATTGTGTACAGAGATGGTGCAACGAGAAAGGAAACACAACTTGCGAAATATGTCTTCAGCAATATGAACCTGGATATACGGTCCCCCCAAAGAAATCTCAGATAAATGGTGAGGCTTTGACAATCAGGGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGCGCAAGATTAGAGGGTGGTGACGAAGGGATCACAACAGAAGGAGATTACTTTCAGTGCACGTCTACCGCTGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGTTGCTTGTGAGGCATCTTTTCGTAGTGCTTACAAGTACAGAGGAAGACTACCCATTTTCACTTTTGACGGTGTTTATACTAAAAGCAAGCGGCATCATTCTCCCTATGTACATAATCATGTGGGCGATTGGAGGCATATATGGCAGTATTCGACGTCACTACCAGGATTCTGACGACGCCGACACGTCAATATCCGACAGTGAAGATGAAGAGAGTGAGCTGATTCATGATACCATTGCTCCACATCAATAA | 780 | 0.4692 | MWPMVSESPDKEYTCQVDGMDMWNSRGGSANCRGKGRGVPTEMPTKGAQLQRICHEEEFESSESLEAPCSCSGTVKFAHRDCVQRWCNEKGNTTCEICLQQYEPGYTVPPKKSQINGEALTIRDSLQIPRDEEPLSARLEGGDEGITTEGDYFQCTSTADRSASCCRSLALTFTLMLLVRHLFVVLTSTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGSIRRHYQDSDDADTSISDSEDEESELIHDTIAPHQ | 259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele05g0347 | 259 | SUPERFAMILY | RING/U-box | 50 | 103 | - | - | |
Lele05g0347 | 259 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 43 | 105 | IPR011016 | GO:0008270 | |
Lele05g0347 | 259 | Pfam | Protein of unknown function (DUF3675) | 104 | 219 | IPR022143 | - | |
Lele05g0347 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 108 | IPR013083 | - | |
Lele05g0347 | 259 | CDD | RING_CH-C4HC3_MARCH | 52 | 98 | - | - | |
Lele05g0347 | 259 | FunFam | E3 ubiquitin-protein ligase MARCH4 | 42 | 108 | - | - | |
Lele05g0347 | 259 | SMART | ringv_2 | 52 | 99 | IPR011016 | GO:0008270 | |
Lele05g0347 | 259 | Pfam | RING-variant domain | 52 | 98 | IPR011016 | GO:0008270 | |
Lele05g0347 | 259 | MobiDBLite | consensus disorder prediction | 234 | 259 | - | - | |
Lele05g0347 | 259 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 49 | 229 | IPR033275 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele05g0347 | Lele-ChrLele05 | 1984574 | 1990111 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele05g0347 | 52 | 98 | C3H Transcription Factor Family | AT2G37950 | 43.750 | 6.74e-06 | 43.9 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele05g0347 | 05 | 1984574 | 1990111 | Lele13g2115 | 13 | 27979470 | 27982447 | CCT | |
Lele05g0347 | 05 | 1984574 | 1990111 | Lele14g2041 | 14 | 26329234 | 26331621 | CCT | |
Lele05g0347 | 05 | 1984574 | 1990111 | Lele15g0296 | 15 | 1680996 | 1683055 | CCT | |
Lele05g0347 | 05 | 1984574 | 1990111 | Lele16g0308 | 16 | 1717791 | 1721834 | CCT | |
Lele13g2127 | 13 | 28053595 | 28056587 | Lele05g0347 | 05 | 1984574 | 1990111 | CCT | |
Lele14g2051 | 14 | 26385519 | 26388638 | Lele05g0347 | 05 | 1984574 | 1990111 | CCT | |
Lele15g0284 | 15 | 1611901 | 1614906 | Lele05g0347 | 05 | 1984574 | 1990111 | CCT | |
Lele16g0299 | 16 | 1657363 | 1660486 | Lele05g0347 | 05 | 1984574 | 1990111 | CCT | |
Lele05g0347 | 05 | 1984574 | 1990111 | Lele05g0347 | 05 | 1984574 | 1990111 | ECH | |
Lele05g0347 | 05 | 1984574 | 1990111 | Lele07g0366 | 07 | 2049907 | 2054404 | hybridization |