Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0347 ATGTGGCCAATGGTGTCGGAGTCGCCGGACAAGGAATATACGTGTCAAGTGGATGGGATGGACATGTGGAACAGCAGAGGAGGGAGCGCCAATTGCCGGGGAAAAGGCAGGGGTGTCCCCACAGAGATGCCGACCAAAGGGGCTCAACTTCAAAGAATATGCCACGAAGAAGAATTTGAGAGCTCCGAAAGCCTCGAAGCTCCCTGTTCTTGTTCTGGCACCGTTAAGTTTGCTCATAGAGATTGTGTACAGAGATGGTGCAACGAGAAAGGAAACACAACTTGCGAAATATGTCTTCAGCAATATGAACCTGGATATACGGTCCCCCCAAAGAAATCTCAGATAAATGGTGAGGCTTTGACAATCAGGGATAGCCTGCAAATTCCAAGGGATGAGGAACCGTTAAGCGCAAGATTAGAGGGTGGTGACGAAGGGATCACAACAGAAGGAGATTACTTTCAGTGCACGTCTACCGCTGATAGAAGTGCATCTTGCTGCAGATCACTGGCTTTAACTTTTACACTCATGTTGCTTGTGAGGCATCTTTTCGTAGTGCTTACAAGTACAGAGGAAGACTACCCATTTTCACTTTTGACGGTGTTTATACTAAAAGCAAGCGGCATCATTCTCCCTATGTACATAATCATGTGGGCGATTGGAGGCATATATGGCAGTATTCGACGTCACTACCAGGATTCTGACGACGCCGACACGTCAATATCCGACAGTGAAGATGAAGAGAGTGAGCTGATTCATGATACCATTGCTCCACATCAATAA 780 0.4692 MWPMVSESPDKEYTCQVDGMDMWNSRGGSANCRGKGRGVPTEMPTKGAQLQRICHEEEFESSESLEAPCSCSGTVKFAHRDCVQRWCNEKGNTTCEICLQQYEPGYTVPPKKSQINGEALTIRDSLQIPRDEEPLSARLEGGDEGITTEGDYFQCTSTADRSASCCRSLALTFTLMLLVRHLFVVLTSTEEDYPFSLLTVFILKASGIILPMYIIMWAIGGIYGSIRRHYQDSDDADTSISDSEDEESELIHDTIAPHQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0347 259 SUPERFAMILY RING/U-box 50 103 - -
Lele05g0347 259 ProSiteProfiles Zinc finger RING-CH-type profile. 43 105 IPR011016 GO:0008270
Lele05g0347 259 Pfam Protein of unknown function (DUF3675) 104 219 IPR022143 -
Lele05g0347 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 108 IPR013083 -
Lele05g0347 259 CDD RING_CH-C4HC3_MARCH 52 98 - -
Lele05g0347 259 FunFam E3 ubiquitin-protein ligase MARCH4 42 108 - -
Lele05g0347 259 SMART ringv_2 52 99 IPR011016 GO:0008270
Lele05g0347 259 Pfam RING-variant domain 52 98 IPR011016 GO:0008270
Lele05g0347 259 MobiDBLite consensus disorder prediction 234 259 - -
Lele05g0347 259 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 49 229 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0347 Lele-ChrLele05 1984574 1990111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0347 52 98 C3H Transcription Factor Family AT2G37950 43.750 6.74e-06 43.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0347 05 1984574 1990111 Lele13g2115 13 27979470 27982447 CCT
Lele05g0347 05 1984574 1990111 Lele14g2041 14 26329234 26331621 CCT
Lele05g0347 05 1984574 1990111 Lele15g0296 15 1680996 1683055 CCT
Lele05g0347 05 1984574 1990111 Lele16g0308 16 1717791 1721834 CCT
Lele13g2127 13 28053595 28056587 Lele05g0347 05 1984574 1990111 CCT
Lele14g2051 14 26385519 26388638 Lele05g0347 05 1984574 1990111 CCT
Lele15g0284 15 1611901 1614906 Lele05g0347 05 1984574 1990111 CCT
Lele16g0299 16 1657363 1660486 Lele05g0347 05 1984574 1990111 CCT
Lele05g0347 05 1984574 1990111 Lele05g0347 05 1984574 1990111 ECH
Lele05g0347 05 1984574 1990111 Lele07g0366 07 2049907 2054404 hybridization