Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0346 ATGGAAAACGTATTATCCAAGAATGTTAATTTTGATGAGAGTTCTCAACATAGACCAGACATGACTGTAGTTCATCAAAAAATCCAATCCAATGACTTCCCGCTTCTCAATGATCTTCCGTCCTTCATCTGCTATCTTTTTTCTTCTGGCTCTTGTTTCGATGATAGTTGTCTTATCATTGACGCCGTGCTGGTGGCTCCAGTGTTATTTCATGCATTCGAGATGATTCCTCAGTTGTCTGAAATCTCATACATTGGGATGGATGGCCTATTTTTCTCGTACTACAGAGAACATGATCAAAATCTTGCAATGTACTCTAACTCTACATTTTCTTCAATCTCGGGTGCTTCAGGAATCATTTACTATGTTCAACCTGTAAATCTTGACACTGGAGGATTATATGGTGAAGCGGTAATATATAAGCACCCTGTTAATACAAGTTGGACTCAGGAAGCAGTCAACACTCCCAACGGATATGCCTCATTGGGATACAAGTGGAGTGACAATAATCAGATTTTATACCTTAATTTGGTCAGAATCTCAAGAACAGGAGTTATCTCATTAGGACTTCCAACAACCACAATTACTGACTTTGTCACTCCCACTAGGCGTCAAGGTGCAAGCTTGTATTTGGCTTCCAAAGATGGAAAAGTGCTTCTACAAGGAATCCAACATACCCATATAGAATTCTATGATGATACGGCTTCCTTCTATTCATTGAAACCAAATGGTGAGCTATTGAGTTATCAGGGCACCGTCTCATGTAAGGCTGAAGCCATTGCTTCTGTTTTGAAAATGGGGGATGCTCACTATTTGACTCGCTGCTCATCAATTGATACAATGGGAGTAGAATTGGTGTACGTCTTGGCTATCCCCCAAAATGGATTGGTGACTTTTGTACATGAGAGTAGAAAAAGGGGATTGGTGTTAATGAGTACAATGATAGTGATGATATTGGTATCTATCTCTAGTTTTCTTTTGTTAAATGCTATAATTGGTTGGCGAGAGATGCATTTATGTGTCTCTCTCATCAAACAAATGGAAGCCACTCAGCAAGCAGAGAGGAAAAGTATGAATAAGAGCCTAGCATTTGCCAGTGCTAGCCATGATATTCGTGCTTTTCTTGCTGGCCTTACTGGTTTGATAGAGATGTCCTATGAAGAAGTTATCCCTGGTTCAGAACTAGAGGCCAATTTAAAACAAATGAGTGCTTGCACAGAAGACTTACTAGGGCTATTGAATTCTATTCTTGATACAAGTAAAATTGAGGCGGGGAAAATGCAGCTTGATGAAGAGGAATTTGATCTATCCCAGGTCATAGAAGAAGCAATTGATTGGTATTATCCTGCGGCTATGAAAAAAGGTGTCGATCTTGTCTTGGACCATTGTAATGGTTCGGTTATCAGATATTCGCATGTCAAAGGTGACAAAGGAAAGCTTAAACAAGTTTTGTATAATTTAGTAAGCAATGCTGTTAAATTTACAGATGAGGGACACATATCAGTTCGAGCTTGGGCTCAAAAGCCAAGTTTCCAGAACTCAATAATGGCTTCTAAAAGATACAATTTTAGCAAGCATTTGCCATGCTTATTTTACAAGAAAAATGAATCAGATGGAGAAGTAGAAGTAAGAAATGCAACCCAACAAGATCCAAACTTGTTGCAGTTTGTGATTGAAGTAGATGATACTGGAAAAGGGATTCCTAAAGAGAAGCATAAGTCAGTGTTTGATAATTATGTTCAATTCAAAGAAAATGCTTCAGGACTTGGAGGCACTGGTTTGGGACTTGGTATTGTGCAATCACTGGTACGTTTGATGCATGGGGACATTGAAATTGTGGAAAAGGAAATAGGTGAAAGAGGATCATGCTTTAGATTCAATGTCCTCCTTCAAGTATGTGAGACAGTCACAGGAGTAGACATAAATCTCAATCAACCACAAGGACAAGCTATAAACACCCCTAGTTCTGGTTCTAGCATATGTTCCCCTAGCCAAAAATTACCTAATTTTGTCTCTAATAGGTCAGGGGCTTCTTGCATTATTCTTCTGATACAAAACAAAGAACGACGGAGGACTACTAGAAGGTTCATGGAGAGCTTAGGGATTAGAGTTAAGGTTGTGCAGCAGTGGGAACATTTGTCTCATACTCTTAAGAAGATCAAGCAAAAGGGGCATAATTCTAGCCAGAGCTCCATAGGAACATCAAACTCTAGTTCTAGGTCTACATCTCAAAATTCTAATTCCAGGGCCAAAGGATTTCCTTTGAGTGCTAAAGATGGAATTGACTATATGCCTTCGATTTTTAATAAGTCAGAAGATAGAGCTTCCTTGGGTTTGGTTCTGCTTGTGATTGATTCAATTGCAGGACCCTTTTCAGAACTTAGCAAAATGGTGTTTGCATTCAGAAAAGACCTAGGGAGTCCTTGCAAGGTGGTTTGGTTAAATAAGCCACTTGTGTCTGGAGAAAATTCCAAAGCACTTGATGAAGATGCAGTAGATCCTGATGACATGATCTTGTCCAAGCCATTTCATGGTAGTCGTTTGTTTGAAATTATAAGGCTTCTTCCCGAGTTTGGTGGTAATTCTACTAATATATCTAGAATTGGAAGAAGGAGGGAAATTTTTCACGATAGACTTAAGAAATCATTGAAAGATTCCCACATGTCAAGATATCAGTCACCTATATCCGACACAGCAGAATTTTCCTCAGCTAATGCAACCCCATTTCAAGACCATGCTAGTTCATCGAGGAGGGATCAACTGCATTCTTCAAGTAGGTCCAAAGCAAGGAATTCTCGAATCAGCCACAAAGAGATACAGGAGTGCAATGATTCAACCAATGACAAGCCCTTGTGTGGCATGAAATTTTTGATTGCTGAGGACGTTGAATATCTACGCAGGATAGCTTTTAAGACTTTGATACAGCTAGGTGCAAGTGCCGCTAACGTGAAGGAATGCAAGAATGGCGAAGAAGCAGTGAATCTAGCTGAAGAGAGTTTAAAAGGGGCTTTTCCTTATGATTACATCATAATGGACTGTGAGATGCCAGTAATGAATGGATTTGAGGCAACGAGGCAGATAAGGAAGATGGAGAAGAGGTATGGGGTTCACATACCTATCTTGGCCTTAACAGCTCATACGTCAGGGGAGGAGATCAGAATGACCAAGGAGGCAGGAATGGACGCTCATTTAGACAAGCCACTTAGAGCACACCATTTACTGGCTGCCATAAAAAAACATACACAATAA 3249 0.3986 MENVLSKNVNFDESSQHRPDMTVVHQKIQSNDFPLLNDLPSFICYLFSSGSCFDDSCLIIDAVLVAPVLFHAFEMIPQLSEISYIGMDGLFFSYYREHDQNLAMYSNSTFSSISGASGIIYYVQPVNLDTGGLYGEAVIYKHPVNTSWTQEAVNTPNGYASLGYKWSDNNQILYLNLVRISRTGVISLGLPTTTITDFVTPTRRQGASLYLASKDGKVLLQGIQHTHIEFYDDTASFYSLKPNGELLSYQGTVSCKAEAIASVLKMGDAHYLTRCSSIDTMGVELVYVLAIPQNGLVTFVHESRKRGLVLMSTMIVMILVSISSFLLLNAIIGWREMHLCVSLIKQMEATQQAERKSMNKSLAFASASHDIRAFLAGLTGLIEMSYEEVIPGSELEANLKQMSACTEDLLGLLNSILDTSKIEAGKMQLDEEEFDLSQVIEEAIDWYYPAAMKKGVDLVLDHCNGSVIRYSHVKGDKGKLKQVLYNLVSNAVKFTDEGHISVRAWAQKPSFQNSIMASKRYNFSKHLPCLFYKKNESDGEVEVRNATQQDPNLLQFVIEVDDTGKGIPKEKHKSVFDNYVQFKENASGLGGTGLGLGIVQSLVRLMHGDIEIVEKEIGERGSCFRFNVLLQVCETVTGVDINLNQPQGQAINTPSSGSSICSPSQKLPNFVSNRSGASCIILLIQNKERRRTTRRFMESLGIRVKVVQQWEHLSHTLKKIKQKGHNSSQSSIGTSNSSSRSTSQNSNSRAKGFPLSAKDGIDYMPSIFNKSEDRASLGLVLLVIDSIAGPFSELSKMVFAFRKDLGSPCKVVWLNKPLVSGENSKALDEDAVDPDDMILSKPFHGSRLFEIIRLLPEFGGNSTNISRIGRRREIFHDRLKKSLKDSHMSRYQSPISDTAEFSSANATPFQDHASSSRRDQLHSSSRSKARNSRISHKEIQECNDSTNDKPLCGMKFLIAEDVEYLRRIAFKTLIQLGASAANVKECKNGEEAVNLAEESLKGAFPYDYIIMDCEMPVMNGFEATRQIRKMEKRYGVHIPILALTAHTSGEEIRMTKEAGMDAHLDKPLRAHHLLAAIKKHTQ 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0346 1082 ProSiteProfiles Histidine kinase domain profile. 366 632 IPR005467 -
Lele05g0346 1082 MobiDBLite consensus disorder prediction 718 753 - -
Lele05g0346 1082 Gene3D - 427 637 IPR036890 -
Lele05g0346 1082 ProSiteProfiles Response regulatory domain profile. 955 1081 IPR001789 GO:0000160
Lele05g0346 1082 SUPERFAMILY CheY-like 953 1080 IPR011006 -
Lele05g0346 1082 SMART HKATPase_4 475 632 IPR003594 -
Lele05g0346 1082 CDD REC_hyHK_CKI1_RcsC-like 956 1077 - -
Lele05g0346 1082 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 414 627 IPR036890 -
Lele05g0346 1082 MobiDBLite consensus disorder prediction 902 942 - -
Lele05g0346 1082 CDD HisKA 360 421 IPR003661 GO:0000155|GO:0007165
Lele05g0346 1082 Pfam Response regulator receiver domain 957 1078 IPR001789 GO:0000160
Lele05g0346 1082 SMART REC_2 954 1077 IPR001789 GO:0000160
Lele05g0346 1082 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 347 427 IPR036097 GO:0000155|GO:0007165
Lele05g0346 1082 PRINTS Bacterial sensor protein C-terminal signature 590 608 IPR004358 GO:0016310|GO:0016772
Lele05g0346 1082 PRINTS Bacterial sensor protein C-terminal signature 556 570 IPR004358 GO:0016310|GO:0016772
Lele05g0346 1082 MobiDBLite consensus disorder prediction 723 752 - -
Lele05g0346 1082 Gene3D - 342 426 - -
Lele05g0346 1082 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 630 IPR003594 -
Lele05g0346 1082 SMART HisKA_10 359 425 IPR003661 GO:0000155|GO:0007165
Lele05g0346 1082 PANTHER TWO-COMPONENT HISTIDINE KINASE 83 1079 - -
Lele05g0346 1082 MobiDBLite consensus disorder prediction 915 942 - -
Lele05g0346 1082 Gene3D - 931 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0346 Lele-ChrLele05 1979393 1983528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0346 65 1068 Histidine Kinase Gene Family AT2G47430 40.421 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele05g0346 HATPase_c 8.6e-26 CL0025