Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0315 ATGAACTCTTCTACAGGAACGTGTGAAACTGCGAGAAAACATCCAATTAAGAACCACAAGAGGAACGCAGAGTGTCATCCATTTGTCCTGACAGAACGACATTTAGCTCCAAGAATCTCTGAATTGTCGACGTTCCAACTAATTATGGTGGCTGAAGCAGATGTTGTTTGCCAACAGAGCCTACCTCTGTTGGATGTCCAGTATATTCCTAAAGCAAGCCGTATTCATGAGATCGAAGATCCATCCTTCGTCTCGCCATTACCGGGGCCTCCCGGTCCTGACAAAGTTCGTGCTTCTGAAGCAGTCTCTGGCCAGTTACTTAATTCACAACAAGATGTTATAGCTGCAAAACAAGTTCCCCATGCTTCTCTTGATTCTGCTGTTGTGCAGTTCGTACCCAGCATCCGTTCTGGTAGTTATGCTGACATTGGGCCGCGTAGATACATGGAAGATGAGCATATAATGATCGATGATTTGTCTTCTCACCTGGGATCACTTTATAAGTTCCCTAAACCCAGTGCCTTTTATGGGGTGTTTGACGGTCATGGAGGATCTGAAGCTGCAGTTTACATCCGTAAGAACGTGATAAGGTTTATTTTCGAGGACGCCAGCTTCCCACAGGCATCCGAATTTGATAATGTCTTGTTGCAAGAATTAGAGAACTCCCTTAAGAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGTAGTGTGAGTAGCTCATCAGGGACCACGGCGCTTACAGCTTTAATATTTGGAAGGCTGTTGATGGTGACCAATGCTGGTGATTGTCGGGCGGTTCTTTGCTGCAAAGGGGACGCAATTGACATGTCTCAAGATCACAGGCCTATATATCCATCAGAACGGAGGCGCGTTGAGGAATCAGGTGGTTTCATTGATGACGGTTATCTTAATGGGGTGTTATCAGTGACTCGAGCGCTAGGGGACTGGGACATGAAGCTCCCACGGGGTTCTCCCTCACCTCTGATTGCAGAGCCAGAGTTTAGGCAAGTGGTTCTAACAGAGGACGATGAATTCCTCATCATAGGGTGTGATGGAATTTGGGATGTTATGTCAAGTCAGCATGCAGTGAGTATTGTTAGGAGAAGCCTGAGGCGGCACGATGATCCTGAGAAGGGCGCAAGAGACTTAGTCATGGAAGCTTTGCGGCTGAATGCGTTTGACAATCTGACAGTAGTTGTTGTGTGCTTCACATCCCCTGATCACAGGGAACTATCACCCGCTCAGAGGTTGAGCCATTGTAGCCTCTCTACAGAAGCACTGGGTAGCTTGAGGAGTTTGTTGGAAGGCAGTGCTAGCAACTAA 1332 0.4707 MNSSTGTCETARKHPIKNHKRNAECHPFVLTERHLAPRISELSTFQLIMVAEADVVCQQSLPLLDVQYIPKASRIHEIEDPSFVSPLPGPPGPDKVRASEAVSGQLLNSQQDVIAAKQVPHASLDSAVVQFVPSIRSGSYADIGPRRYMEDEHIMIDDLSSHLGSLYKFPKPSAFYGVFDGHGGSEAAVYIRKNVIRFIFEDASFPQASEFDNVLLQELENSLKKAFLLADSALADDCSVSSSSGTTALTALIFGRLLMVTNAGDCRAVLCCKGDAIDMSQDHRPIYPSERRRVEESGGFIDDGYLNGVLSVTRALGDWDMKLPRGSPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSIVRRSLRRHDDPEKGARDLVMEALRLNAFDNLTVVVVCFTSPDHRELSPAQRLSHCSLSTEALGSLRSLLEGSASN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0315 443 CDD PP2Cc 135 406 IPR001932 -
Lele05g0315 443 Pfam Protein phosphatase 2C 146 398 IPR001932 -
Lele05g0315 443 PANTHER PROTEIN PHOSPHATASE 2C 122 404 IPR015655 GO:0004722|GO:0006470
Lele05g0315 443 Gene3D - 122 413 IPR036457 -
Lele05g0315 443 ProSiteProfiles PPM-type phosphatase domain profile. 136 406 IPR001932 -
Lele05g0315 443 FunFam Probable protein phosphatase 2C 22 121 409 - -
Lele05g0315 443 SMART PP2C_4 126 404 IPR001932 -
Lele05g0315 443 ProSitePatterns PPM-type phosphatase domain signature. 175 183 IPR000222 GO:0043169
Lele05g0315 443 SUPERFAMILY PP2C-like 130 407 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0315 Lele-ChrLele05 1798662 1801146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0315 149 439 PP2C-type Phosphatase Gene Family AT3G62260 69.388 1.32e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele05g0315 PP2C 2.7e-64 CL0238