Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0310 ATGGATGACTGCTGTGCTGTTTGCGCCGAACCTTTGGAATGGGTTGCGTACGGTTCCTGTTTGCATAGGGAGGTTTGCTCAACCTGCGTAGCTCGTCTACGTTTCATATGCGACGATCGCCGCTGCTGCATCTGTAAGACCCAGTGCGACCGTGTTTTTGTCACAAAGGCCCTGGGAGATTTTACAAGGATGATTAATAACTTCTCGGTGCTGCCATCAGATGTAAGGGAGGGTCAGGTTGGTTCATACTGGTACCATGAAGATACAAATGCTTTTTTTGATGATGTGGAACACTACAAAATGATCAAGGCTATGTGCAAGCTCTCATGTAGCGTATGTGACAAGATGGAGGAGCAAGCACCTGATGCCTCAAAGCGTCGAGCAAGGTTTCGGAATATAGAACAGCTAAAGGGTCACTTGTTCCGCTTTCACAGGTTGCTCATGTGCAGTTTATGTTTGGAAGGAAGGAAGGTATTCATTTGTGAACAAAAGCTATATACTAGAGCACAGTTAAATCAGCATATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGATAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCCGAACCCCCTTTTATGGGGACAATGAACTATACACTCATATGTCAACAGAACATTTTACTTGTCATATATGCCAAAGGCAACATCCAGGACACTATGAATATTATAAGAATTATGATGACTTAGAGACCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAAGCTTGCCTTGGTAAAAAGTTCATTGTGTTTCAATCTGAAGCAGAGATGAAGAGACATAATGCTATTGAACATGGAGGGCGAATGTCAAGGTCAAAGCGCAATGCTGCTCTTCAGATTCCAACTAGCTTCCGATACAGACACGGTAATCAACAAGATCAACGGCGTGGTAGAGGTCGGACATTTCGTCGTGATCTTTCTGAAAGTGAACTTTCTATGGCCATTCAAGCCAGTTTTGACACAGCTAGTGCAGAGAGCACTAGTCATGATCCAGCTACATCAAGCAGTGGAGAAGTTGCTCTTGGTTATGGAAACTTTGATAATGAGCCAGGCATCCAATCATCTGAATCCTTAGCTACATCAAGTTCTGAATTGTCTTCAAGATACCTCCAAGCCTTGGGACATTCAAGGAGTTCACCATTGGGAGATTCCTCCTTTCCTCCACTTCCCATAGCATCAATCAATGGCCAAGCAAAGCCCAAAAATGAGCCTGAAGGTTCATCTAGTAACACTATGGCTGCACATTTGCGTCGGCATAGCAACAGAAATGTATCTGCTCTTAGTCAGCATAGCAACATAAACGTATCTGCTCTTAATTCTGCTAATGGATGGCCAGTTGCAGGTCGTGGATCTGTGCAATCATCAAGTAATCCTATGCAATCTAAAAAGCCAACAAATGTTGCTCCTGGAGTGTCAGGTAATTCCAGTCAGACAAATCGTGGACCTGCAATGTCCACCTATGCTAGTTCTGTCCAGGCTAAACAGAGAACTGCTCATGGGCATTTGTCTCCTGGCACGTCAAGGGAAATACGTGACAATGGTAGAATCGTTCATTCTGCTTCTGCTCCAAATCTGATTGAAAGGGGTCCTTTGGAAACTTCATTTCCTGATTTTCCTCCAGTATCTGCTACAAAAGCAAACAAGTTGCCTGCAAGTAGCCAGTCTTTGACAATGACGAATGTGGGGGTTGTTCATTCTGCTAACAAGTCCTTGGTTGACAAGATTCGTAGTGCTCTTGATTTTGATCAAGATAGATACACCATTTTTAAAGACATTTCTGCACAATATCGCCAAGGAATAATTGATACAGGCACATATTTGGATTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTACTTGAGTTAGCTAGACTGTGCCCTGATCCACAGAAGCAGAAAGAACTTGTTGATTCTTACAATGCGAGTGTGCAAAGAACTGCTTTACAAGAAAATGATTGTGGTGACAGTAGTATCCATCACAAAGATGGCAAAGTCTCCAAGAAAGGTAAAGGTAAAGGGAAGTCTATGGATATTGAAGAGAGGAACTTTAAGGAGAGTGTAGAAGATAGCTTTATAAGCACCGTACGTCAATTACAGTTGAATCATAAACCTTCAGAAGAGAACGCTGAGGTACTATCAAAGGGTGATTACCGTAGAGCCAAAGGTAATTCGAAAATTTTGGCTGATGAACAACTGATTGGTACTAATTCTCCTAGTATATCCAACCCAAAGAATGCTGGGCCGGGTGAAGCATCACTTGGCAGTTTTCCTAACCAAAGTAAAGATGAGGGGGCTGTTGGGAGCAAGCAACGCAAGAAAAGTTCTAAGTTCATTAGAATGCGCCTTGGGGATGGTTCCGTAGAAACATTGTTGGATCTTAGGAGTTCAAATGCCAACTCAGATCCTGGATCAGAGGCCTTGGATGGTAATAAGAACGATGCTGGAGGACTGCCTGTGCGAGGTGTCTGGCGGAATGGAGGAGGTCATAAACTCTTTTCCTAG 2547 0.4346 MDDCCAVCAEPLEWVAYGSCLHREVCSTCVARLRFICDDRRCCICKTQCDRVFVTKALGDFTRMINNFSVLPSDVREGQVGSYWYHEDTNAFFDDVEHYKMIKAMCKLSCSVCDKMEEQAPDASKRRARFRNIEQLKGHLFRFHRLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESDRGGFMGHPMCEFCRTPFYGDNELYTHMSTEHFTCHICQRQHPGHYEYYKNYDDLETHFRQEHFLCEDEACLGKKFIVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNQQDQRRGRGRTFRRDLSESELSMAIQASFDTASAESTSHDPATSSSGEVALGYGNFDNEPGIQSSESLATSSSELSSRYLQALGHSRSSPLGDSSFPPLPIASINGQAKPKNEPEGSSSNTMAAHLRRHSNRNVSALSQHSNINVSALNSANGWPVAGRGSVQSSSNPMQSKKPTNVAPGVSGNSSQTNRGPAMSTYASSVQAKQRTAHGHLSPGTSREIRDNGRIVHSASAPNLIERGPLETSFPDFPPVSATKANKLPASSQSLTMTNVGVVHSANKSLVDKIRSALDFDQDRYTIFKDISAQYRQGIIDTGTYLDYVQQFGLSHLVLELARLCPDPQKQKELVDSYNASVQRTALQENDCGDSSIHHKDGKVSKKGKGKGKSMDIEERNFKESVEDSFISTVRQLQLNHKPSEENAEVLSKGDYRRAKGNSKILADEQLIGTNSPSISNPKNAGPGEASLGSFPNQSKDEGAVGSKQRKKSSKFIRMRLGDGSVETLLDLRSSNANSDPGSEALDGNKNDAGGLPVRGVWRNGGGHKLFS 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0310 848 MobiDBLite consensus disorder prediction 334 375 - -
Lele05g0310 848 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lele05g0310 848 SMART c2h2final6 220 250 IPR013087 -
Lele05g0310 848 SMART c2h2final6 196 219 IPR013087 -
Lele05g0310 848 SMART c2h2final6 251 280 IPR013087 -
Lele05g0310 848 SMART c2h2final6 108 144 IPR013087 -
Lele05g0310 848 MobiDBLite consensus disorder prediction 461 530 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 389 427 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 743 795 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 666 693 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 461 517 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 744 779 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 808 848 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 334 356 - -
Lele05g0310 848 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lele05g0310 848 PANTHER ZINC FINGER PROTEIN 598 1 753 IPR044288 GO:0061630|GO:0072344
Lele05g0310 848 MobiDBLite consensus disorder prediction 301 322 - -
Lele05g0310 848 MobiDBLite consensus disorder prediction 304 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0310 Lele-ChrLele05 1759414 1763741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0310 1 848 C2H2 Transcription Factor Family AT3G62240 51.139 0.0 807
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0310 05 1759414 1763741 Lele05g0310 05 1759414 1763741 ECH
Lele05g0310 05 1759414 1763741 Lele07g0330 07 1823257 1828352 hybridization
Lele05g0310 05 1759414 1763741 Lele08g0132 08 806257 811311 hybridization