Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0305 ATGAATAAGATATTCCTGCCCGGGGTTGCACTCATCCTGGTCGTAGGTTGTGCTGTCGGGACTATTCTCGTTGTCAGAAAAGGCAGTGACAGTGGTGGTGGTGGTGGTGGTGAGTTGGCATCCCACAACAGGGCCGTAACGGCGATATGCCAAGGCTCCGATAACAAGCAGCAATGCGAAGACACTCTGGGGACCGTCAATTCCACGGATCCAAAAGATTACATCTCGACGACGGTAGCGAAAGTGATGCAAAAGGTGATAGGTGCCGTTAACATGAGCGACAAACTGGCCGTCGAACATGGCTCCGAAAACAAGGGCGTTAAGATGGCCATTGATGATTGCCAGGACCTGTTGCAGTCGGCCATGGATTCACTCGAGGCATCGAATGCTATGCTCAAAGGCGACGATATTAGAAGCATCGAGAACAGAACTGACGACCTCAGGAACTGGTTCGCCATGGTGTTATCCTTCCAAGAATCATGCTACGACGGGTTCGAGGATGGCGGCGGCGAGGAAAAGATCAGAGATACACTTCACACAGAAGGTGGTCTGGACGACATACAGAAGCTCACTGGAGTGGCGCTTGATGTTCTCTCCGGCCTCAACACCCTGCTTGCCGCATTCAACTTGGATTTGACAGTGAAGACTCCGTCTCGTCGTCTCCTGGAAGAAGGAGAAGATCCCAGTTGGTTGCATGAAGCTGATCGCAAGCTCTTGGCGGCAGCCAACCCTCCGCCCAACGCAGTGGTTGCGAAAGATGGCAGTGGTCAATTTAAAACCATCACCGACGCTATTAATTCATACCCAAAGAACTTCCAAGGCAGATTCATTATCTACGTCAAAGCTGGAATCTATAATGAGTACCCTCTTATTGACAAGAAAAAACCCAATGTTTACATGTACGGAGATGGCGCTACGAAAACCGTCATCACTGGAAACAGATGCGTGGAGCCCAAGAAGGAGTGGAGGACCTTCAACAGTGCCACTTTCGCCGTTGTTGGAGACATGTTCATTGCCAAGGGAATAGGATTCGACAACACAGCTGGTTCTGTCGGACATCAAGCAGTGGCGCTCCGGACGCAAGCAGCACATGCGGCATTTTTCCAGTGCGCGTTCCGAGGTTTCCAGGACACGTTATACGTGCAAGCAGGGATTCAGTTGTTCCGGGAGTGTGAAATCACAGGAACCATCGACTTCATATTTGGCGCGTCAAGAACTCTGATACAGAATTCACGTATCATTATGAGGAAGCCAATGCCGAACCAACAGAACATAGTGGTAGCAGATGGTACCTTGGACTCTAAGTCAGGGACTGGGACCGTGCTTCAGAACTGTGACATCTCGGCAGAGCCAGGGCTGGACAAGAAAGTTAATCCTTGCTACTTGGCTCGTCCATGGAAGGCATTCTCTAAGGCCATCTTCATGGAAAGTAATCTGGGTGATATCATTCACCCCGATGGCTGGCTTCCATGGAGCGGTGATCAGTTCCTAAAAACATGTTACTTCGCTGAGTATGCCAACACTGGACCTGGTTTTAGTCCTGCCACCAGGGTCAAGTGGGGTCGAGGCCTCCTTACCAAGGATCAAGCTTCTACATATACTGCTACTCGATACCTCGAAGGTGCTGGTCTTCCATGGTTGGGTGCCACTGGTGTTCCTTTCGTTGCTGGCTTGACCAAGGGTTAG 1686 0.5065 MNKIFLPGVALILVVGCAVGTILVVRKGSDSGGGGGGELASHNRAVTAICQGSDNKQQCEDTLGTVNSTDPKDYISTTVAKVMQKVIGAVNMSDKLAVEHGSENKGVKMAIDDCQDLLQSAMDSLEASNAMLKGDDIRSIENRTDDLRNWFAMVLSFQESCYDGFEDGGGEEKIRDTLHTEGGLDDIQKLTGVALDVLSGLNTLLAAFNLDLTVKTPSRRLLEEGEDPSWLHEADRKLLAAANPPPNAVVAKDGSGQFKTITDAINSYPKNFQGRFIIYVKAGIYNEYPLIDKKKPNVYMYGDGATKTVITGNRCVEPKKEWRTFNSATFAVVGDMFIAKGIGFDNTAGSVGHQAVALRTQAAHAAFFQCAFRGFQDTLYVQAGIQLFRECEITGTIDFIFGASRTLIQNSRIIMRKPMPNQQNIVVADGTLDSKSGTGTVLQNCDISAEPGLDKKVNPCYLARPWKAFSKAIFMESNLGDIIHPDGWLPWSGDQFLKTCYFAEYANTGPGFSPATRVKWGRGLLTKDQASTYTATRYLEGAGLPWLGATGVPFVAGLTKG 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0305 561 PANTHER PECTINESTERASE 17 548 - -
Lele05g0305 561 FunFam Pectinesterase 4 245 558 - -
Lele05g0305 561 Pfam Pectinesterase 247 541 IPR000070 GO:0030599|GO:0042545
Lele05g0305 561 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Lele05g0305 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 172 IPR006501 GO:0004857
Lele05g0305 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 202 IPR035513 -
Lele05g0305 561 SUPERFAMILY Pectin lyase-like 243 557 IPR011050 -
Lele05g0305 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 195 IPR035513 -
Lele05g0305 561 SMART PMEI_2 41 197 IPR006501 GO:0004857
Lele05g0305 561 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Lele05g0305 561 Gene3D - 242 558 IPR012334 -
Lele05g0305 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lele05g0305 561 CDD PMEI-like_3 48 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0305 Lele-ChrLele05 1733223 1734987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0305 4 561 Carbohydrate Esterase AT3G05610 37.018 3.20e-122 373