Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0302 ATGGGGACCGAGAATGGCCAAGGCGAAGCAAGCACATCAAAGAACGAAGTAGGAACAAGCTCAAATGAAGAAAATAGCAATCAAACAGAAAAGGCCGAGACAGTTCCGTTTCATAAGTTGTTCACATTTGCCGACTATACAGATATATTGTTGATGGTTGTTGGCAGCATCGGGGCCATCGGAAACGGTGCGGGTCTTCCTCTTATGACGTTACTGTTCGGCGAGATGATTGACTCATTCGGAAGCAATCAGTATAGCGCTGACGTGGTCGATGAAATTTCCAAGGTTTCTCTGAAGTTTGTGTACTTGGCGGTAGGAATTGGAGTGGCAGCTTTTCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGACAGGCCGCGAGAATAAGGAGTTTGTATTTGAAAACAATACTAAGACAAGATGTGGCTTTCTTCGATATGGAAACAAACACCGGAGAGGTGGTCGGTAGAATGTCAGGTGACACTGTTCTTATACAAGACGCCATGGGTGAAAAGGTTGGAAAATTTCTGCAGCTAATATCAACATTCATTGTGGGTTACATAGTAGCATTTGTGAAAGGGTGGCTTCTCAGTCTCGTCATGTTATCCACTCTTCCACTTCTTGTGGTCTCTGGTGCGGCTATGGCCTTCATTATAGGCAGGATGGCATCGCAAGGCCAAACCGCTTATGGAAAAGCTGCAAACGTCGTTGAACAGACAATTGGAGCAATTAGAACGGTTGCATCCTTCACCGGAGAGAAGCAAGCAGTATCTGGTTATAGCAGGTTTCTTGTAGATGCATACAGAGCAGGAGTTCAGGAAGGTTTGGTAGCAGGAGCGGGTATTGGGACAGTCATGTTCGTAATTTTCTGTGGCTATGCTTTGGCCACATGGTATGGTGCAAAGTTGATACTGGATAAAGGATATAACGGGGGTGATGTGATTACTGTGATATTTTCCGTCTTAACTTCTTCCATGAATCTTGGTCAAGCAGCCCCTTGTTTGAGTGCTTTTGCGGCAGGCCAAGCTGCAGCTTATAAAATGTTCAAGGCTATTGAGAGAAAACCAGAGATAGATTCTTATGATGAAAACGGGAAAACATTAGAAGATGTTCAAGGGGAAATAGAGTTGAGGGAAGGATTGGACACAATGGTTGGTGATCATGGAACTCAGTTGTCTGGGGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTCAAAAATCCAAAAATCCTACTTCTAGATGAAGCTACGAGTGCGCTTGATGCAGAATCTGAAAGGATTGTGCAAGAGGCTTTGGACAGGATCATGGTAAACAGAACTACTGTTGTTGTGGCACACCGCTTAAGCACAGTGAAAAATGCCGATATGATTGCTGTGATTCACAGAGGAAAAATGGTTGAGAAAGGAACACACACAGAATTACTCAAGGATCCTGAAGGAGCATACTCTCAGCTTATACGCCTACAAGAAGTAAATAAGGAGTCAGGAGATAGTGTAGATGATGAAAACAAGCATGAACTTTCCTCAGATTCCTTAAGGCATTCTAGTCAGATAAGGTCATTAGGAAGATCCATAAGTCGAGGTTCATCGGTGGGAAATAGCAGCCGCCACTCATTTTCAGTTGCGTTTGGCTTGCCTACTGCAGTCAACACTACTGATCCCGAACTTGAAAATCCAGAAACTAAAGAACGATCACCAAAGGTTCCACTCCGCCGCCTTGCTTCCCTCAACAAGCCAGAGATCCCAGTGCTCCTGATCGGATCTTTAGCTGCCATTGTGAATGGTGCCGTGCTTCCTATATTTGGCATTTTGATTTCTAGTGCAATCAAATCGTTCTACGAGCCACCTGATGAAATGAAAAAGGATTCCAAGTTCTGGGCCTTAATGTTTCTGATACTTGGTATTGCGTCTGTGGTGGCACTTCCTGCTCGAGGATACTTTTTCGCCGTTGCCGGATGTAAGTTAATCCAACGCATCAGGCAGATGTGCTTTGAGAAGGTAGTAAGGATGGAGATAGGCTGGTTTGATGATCCTGAGCATTCGAGTGGTGTAATTGGAGCAAGGCTCTCAGGAGACGCAGCAACTGTTCGTGCACTTGTTGGGGATGCTCTTGGACAACTGGTCGAGAATCTCGCATCATTACTGGCGGGTTTGATAATTGCTTTCATTGCAAGCTGGCAGTTAGCTTTTATTATTCTTGTATTGATTCCCCTGATTGGGGTAAACGGATACATTCAAGTGAAATTCATGAAAGGGTTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGTCAAGTTGCTACGGATGCAGTTGGAAGTATAAGAACAGTAGCTTCATTTTGTGCTGAAGAAAAGGTGATGGAACTATACAGAAAGAAATGTGAAGGGCCTATGAAATCAGGGATACATCAGGGCTTGATCAGCGGAACAGGATTTGGAGTATCGTTTTTCCTACTCTTCTCCGTCTATGCAACCAGCTTTTACGCGGGAGCTAAGCTTGTGGAGGACGGCAAAGCGACATTTCCAGATGTTTTTCGGGTTTTCTTTGCTTTAACCATGGCAGCTTTAGCCGTTTCCCAATCAAGCTCTTTTGCGCCTGATTCTAGCAAAGCCAAGTCAGCCGCAGCTTCTATATTTGGAATAATTGACAGGAAATCGGAGATAGATCCAAGCGACGAGTCAGGAGACACATTGGATAGCGTGAAGGGAGAAATTGAGCTTCGTCATGTCAGCTTCAAGTATCCATCAAGGCCAGATATACAGATTTTCCGAGACCTTAGCTTGGCCATACATTCTGGAAAGACGGTGGCCCTTGTAGGTGAAAGTGGAAGCGGAAAATCTACGGTGATTTCATTATTGCAAAGATTTTACGATCCTGATTCAGGTTCAATTACACTCGATGGAATAGAGATTCAAAAGTTGCAACTTAAATGGGTAAGGCAACAAATGGGTCTTGTGAGCCAAGAGCCAATATTGTTCAATGACACTATTCGTGCCAATGTTGCCTATGGAAAGGGAGGCGATGCAACTGAAGGAGAAATCATAGCTGCAACCGAACTGGCCAATGCTCATAAGTTCATTAGCGGGTTACAACAAGGGTATGATACAGTAAGTTCAAACTTCTTCTCCACGTGGCATTTGCGGCGAGCTCCATCATTAGCAGTACCTTGTTACTTCTCCTTTGCTCGTTCTATCAGACTTCTATTGCCAAGTAAAAACTCCAACAGACTTCAAATTCTGAGCTCAGGTCATTCCATTGAGCTCACCAGCAAAGCAAATAAGAAAACTGAGCAAAACGGTGTGAAGAGGTGA 3321 0.4456 MGTENGQGEASTSKNEVGTSSNEENSNQTEKAETVPFHKLFTFADYTDILLMVVGSIGAIGNGAGLPLMTLLFGEMIDSFGSNQYSADVVDEISKVSLKFVYLAVGIGVAAFLQVACWMVTGERQAARIRSLYLKTILRQDVAFFDMETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLISTFIVGYIVAFVKGWLLSLVMLSTLPLLVVSGAAMAFIIGRMASQGQTAYGKAANVVEQTIGAIRTVASFTGEKQAVSGYSRFLVDAYRAGVQEGLVAGAGIGTVMFVIFCGYALATWYGAKLILDKGYNGGDVITVIFSVLTSSMNLGQAAPCLSAFAAGQAAAYKMFKAIERKPEIDSYDENGKTLEDVQGEIELREGLDTMVGDHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVKNADMIAVIHRGKMVEKGTHTELLKDPEGAYSQLIRLQEVNKESGDSVDDENKHELSSDSLRHSSQIRSLGRSISRGSSVGNSSRHSFSVAFGLPTAVNTTDPELENPETKERSPKVPLRRLASLNKPEIPVLLIGSLAAIVNGAVLPIFGILISSAIKSFYEPPDEMKKDSKFWALMFLILGIASVVALPARGYFFAVAGCKLIQRIRQMCFEKVVRMEIGWFDDPEHSSGVIGARLSGDAATVRALVGDALGQLVENLASLLAGLIIAFIASWQLAFIILVLIPLIGVNGYIQVKFMKGFSADAKMMYEEASQVATDAVGSIRTVASFCAEEKVMELYRKKCEGPMKSGIHQGLISGTGFGVSFFLLFSVYATSFYAGAKLVEDGKATFPDVFRVFFALTMAALAVSQSSSFAPDSSKAKSAAASIFGIIDRKSEIDPSDESGDTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGSITLDGIEIQKLQLKWVRQQMGLVSQEPILFNDTIRANVAYGKGGDATEGEIIAATELANAHKFISGLQQGYDTVSSNFFSTWHLRRAPSLAVPCYFSFARSIRLLLPSKNSNRLQILSSGHSIELTSKANKKTEQNGVKR 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0302 1106 FunFam ABC transporter B family member 1 566 874 - -
Lele05g0302 1106 Pfam ABC transporter 927 1029 IPR003439 GO:0005524
Lele05g0302 1106 MobiDBLite consensus disorder prediction 495 536 - -
Lele05g0302 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1040 IPR027417 -
Lele05g0302 1106 ProSitePatterns ABC transporters family signature. 392 406 IPR017871 GO:0005524|GO:0016887
Lele05g0302 1106 Gene3D ABC transporter type 1, transmembrane domain 566 874 IPR036640 GO:0005524|GO:0016020
Lele05g0302 1106 Gene3D ABC transporter type 1, transmembrane domain 39 364 IPR036640 GO:0005524|GO:0016020
Lele05g0302 1106 Gene3D ABC transporter type 1, transmembrane domain 493 511 IPR036640 GO:0005524|GO:0016020
Lele05g0302 1106 Gene3D ABC transporter type 1, transmembrane domain 875 897 IPR036640 GO:0005524|GO:0016020
Lele05g0302 1106 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g0302 1106 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 336 - -
Lele05g0302 1106 PANTHER ABC TRANSPORTER B FAMILY 560 1040 - -
Lele05g0302 1106 SUPERFAMILY ABC transporter transmembrane region 568 893 IPR036640 GO:0005524|GO:0016020
Lele05g0302 1106 MobiDBLite consensus disorder prediction 495 514 - -
Lele05g0302 1106 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 177 489 IPR003439 GO:0005524
Lele05g0302 1106 MobiDBLite consensus disorder prediction 515 536 - -
Lele05g0302 1106 FunFam ABC transporter B family member 9 875 897 - -
Lele05g0302 1106 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 587 873 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g0302 1106 FunFam Cullin-associated NEDD8-dissociated protein 1 898 983 - -
Lele05g0302 1106 FunFam ABC transporter B family member 9 39 372 - -
Lele05g0302 1106 Pfam ABC transporter transmembrane region 55 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g0302 1106 Pfam ABC transporter transmembrane region 586 858 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele05g0302 1106 Gene3D - 378 492 IPR027417 -
Lele05g0302 1106 Gene3D - 365 377 IPR027417 -
Lele05g0302 1106 Gene3D - 898 1040 IPR027417 -
Lele05g0302 1106 SMART AAA_5 270 452 IPR003593 -
Lele05g0302 1106 SMART AAA_5 935 1054 IPR003593 -
Lele05g0302 1106 CDD ABC_6TM_Pgp_ABCB1_D2_like 576 891 - -
Lele05g0302 1106 Pfam ABC transporter 363 420 IPR003439 GO:0005524
Lele05g0302 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 491 IPR027417 -
Lele05g0302 1106 MobiDBLite consensus disorder prediction 1 31 - -
Lele05g0302 1106 SUPERFAMILY ABC transporter transmembrane region 39 359 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0302 Lele-ChrLele05 1704604 1711488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0302 377 492 Calmodulin-binding Proteins AT2G36910 63.248 3.96e-37 150