Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0287 ATGGGGAGGCACTCCTGCTGCTACAAGCTAAAGCTTCGCAAAGGTCTCTGGTCCCCTGAAGAAGACGAGAAGCTCCTCAGGCATATCACTAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGCAGGCTTGCAGAGATGTGGAAAGAGCTGTAGACTGAGGTGGATCAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCACAAGAAGAGGAAAACCTCATCATTGAACTTCATGCAGTCTTAGGGAATAGATGGTCTCAAATTGCAGCACAGCTGCCAGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCATGCCTCAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCTGTGACTCATAAACCACTGTCGGATGTTGAGAATGGAGATCAGGACAAAGATGGAGAGAAAGTTGCAGCGGTTAGTTCCAATGAATTGAACCTGCTGAAATCAGAAAGCTCAAAGTCCGATGGAGCTTCCTATGAGCACAAACCATGTTCTTCAAGTATTGCCCATAGAGCCTATGTACACGACGTGGAAGGTTCTTCTTCCACCTCCAAGATGAACACATATTTCATCTCCGATTGTTGCAGTAAAGGCTTGTTCCTGGACAACAGGTTCATCCCCAGCAGCAGTCACCAGGAAAGCTACCCTACTTCAGATTTCATGACGAATTTCCCTCTTCACATGACCTATAATAACAATAATCCATTCACTACTCAAACCGGAGGAATTAGACCATTTGATATCAATACTGATCAATTCACCTCCAGTGCCATGTCCACTGTCTTTCCACTTTCTTCAACCTCCTCATTTCTCCCAACTTCTGTCTTCTACAAGCCTTCTCTCCCATCAGTTCCATCTGATGATATCTCTACAGGTTCCTTCTCCATGAATGAATCCCAGTACTGGGAAGCCACTGCTTCCAACAGCCACAGCAATAGAAACAGCTCCTCGAACTTGCACAACAGTATTGTTTCTTGGGGATTGACAGATTGTGGCGGTACTACTAAAGAGACTCATCATCTTCAGATTAATATGATGGAGACTCAGACGACAGAAGAAGCTAGGTGGGCTGAGTACGTTCATAGTAACCCGATATTAATGCTGGCTCCAGAATCCTTATGCAACGATATAAAGCCACCGGCCAACTCACATTTGGTACCCGACGCTTTAGGAGCCATTTTGCCTCATCACAAGCAACAAGACCATCATCAAGCTTTACAAACTTCTGCAATATTCTCAAAGGACATCCAGAAGCTCACTGCAGCTTTCGGAGATATATAG 1305 0.4506 MGRHSCCYKLKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSDVENGDQDKDGEKVAAVSSNELNLLKSESSKSDGASYEHKPCSSSIAHRAYVHDVEGSSSTSKMNTYFISDCCSKGLFLDNRFIPSSSHQESYPTSDFMTNFPLHMTYNNNNPFTTQTGGIRPFDINTDQFTSSAMSTVFPLSSTSSFLPTSVFYKPSLPSVPSDDISTGSFSMNESQYWEATASNSHSNRNSSSNLHNSIVSWGLTDCGGTTKETHHLQINMMETQTTEEARWAEYVHSNPILMLAPESLCNDIKPPANSHLVPDALGAILPHHKQQDHHQALQTSAIFSKDIQKLTAAFGDI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0287 434 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele05g0287 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele05g0287 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele05g0287 434 CDD SANT 17 61 IPR001005 -
Lele05g0287 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele05g0287 434 FunFam Myb transcription factor 11 67 - -
Lele05g0287 434 FunFam MYB transcription factor 68 140 - -
Lele05g0287 434 Gene3D - 68 141 - -
Lele05g0287 434 CDD SANT 69 109 IPR001005 -
Lele05g0287 434 SMART sant 13 63 IPR001005 -
Lele05g0287 434 SMART sant 66 114 IPR001005 -
Lele05g0287 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele05g0287 434 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele05g0287 434 Gene3D - 11 67 - -
Lele05g0287 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele05g0287 434 PANTHER MYB DOMAIN PROTEIN 55 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0287 Lele-ChrLele05 1617460 1618942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0287 1 139 MYB Transcription Factor Family AT4G01680 91.367 1.25e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g0287 Myb_DNA-binding 2.1e-14 CL0123