Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0263 ATGAATTCGTCTGCCCTAGAAAGGGAATTATGTGTAACGAAGGCGAAAATGTCCTCCTCAAGACCTAGCCAGTCATCCAGTAACTCGGGAAGATCAAGACATAATGCTCGAATTATTGCTCAGACCACTGTAGATGCAAAACTACATGCAAATTTTGAGGAGTCTGGTACCTCTTTTGACTACTCAAACTCGGTGCGTATCTCTGGTGCAGTAAATGGACAGCAGCAACCAAGATCTGACCGGGTGACTACAGCTTACCTCCATCACATACAGAAAGGAACGCTGATCCAGCCTTTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAGGTGATTGCATACAGTGAGAATGCTCCTGAAATGTTGACCATGGTTAGTCATGCTGTACCTAGTGTAGGTGACAACCCTGCCCTTGGCATTGGCACCGACATAAGAGCCATATTCACTGCCCCAAGTGCTTCTGCGTTGCAGAAAGCATTAGGATTTGGGGAAGTTTCACTTCTCAACCCTATTCTAGTCCATTGTAAAACCTCTGGAAAGCCCTTTTACGCAATTATCCATCGTGTGACTGGAAGCTTGATAATTGATTTTGAGCCAGTCAAGCCTTTTGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCTTACAAGCTTGCTGCCAAAGCAATCACTAGATTGCAATCTTTGCCAAGAGGCAGTATGGAAAGGCTATGTGATACGATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGATGATGATCATGGGGAAGTAATTTCTGAGATCACAAAGCAAGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGATATTCCACAGGCTGCACGGTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTGGATTGTTGTGCGAGGCATGTGAAGGTGCTTCAAGATGAAAAACTGCCATTTGAGTTAACCTTGTGTGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCCCTGGTTATGGCAGTGGTGGTCAATGACAGTGATGAAGATGTGGACAGCTCTGATTCTATACAGCCGCAGAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGCCATAACACTACACCAAGGTTTGTTCCTTTTCCTCTTCGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCTATCCATGTGAATAAAGAATTAGAGTTAGAATACCAGATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACTCCTAGGTATTATATCACAGAGCCCTAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGAGACTAGGAGTAACACCAAGTGAATCCCAGATCCGAGATATATCTATATGGCTCTCTGAGAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCAGGTGCTCTTGCTCTTGGTGATATAGTATGTGGGATGGCAGCTGTGAGAATATCTTCAAAAGATATGGTTTTCTGGTTTAGATCGTATACTGCTGCAGAAATTCGATGGGGTGGTGCGAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAGTTAATCCTGAGGAACGCATTTAAAGATACAGAGAGTATGGCTGTAACCACCAATGCAATTAACACAAGATTGAGCGATTTGAAGATTGAAGGGATGCAGGAATTGGAGGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCAATATTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGTCTTCCAGTTGAGGAAGCAATCGGGGAGCATCTGCTCACACTAGTTGAGGATTCTTCAACTGATAGGGTCAAGAAGATGCTGGACATGGCACTGCAAGGTGAAGAAGAGCAGAATGTCCAATTTGAGATCAAAACACATGCATCTAAGATTGATTCTGGTCCCATCAGGTTGGTTGTTAATGCTTGTGCAAGTAGAGACCTTCGAGACAACGTAGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATTGAAGGTGATTACAAGGCAATTGTCCAGAATCCAAACCCATTGATACCCCCAATTTTTGGTTCAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCTGCAATGATCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTGTTAGGGGAGGTCTTTGGAACTCATGCAGCTTGTTGCCGTTTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAATTGCACTTAATAAAGCCATGACCGGTTTGGAAACTGAGAAGGTTGCTTTTGGCTTTTTTTCTCGGAATGGGAAGTTTGTAGAGTGCCTGCTTTCTGTGAGTAAGAAGTTGGACATAGAGGGGACGGTTACAGGGGTTTTCTGCTTCTTGCAGTTAGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTACATGAAAGGGCAGATACGGAATCCTTTAAGTGGGATTGTGTTCTCCCGTAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGCCAGATCAGCAAAGTTCTTGATGATTCTGATCTTGACAGCATCATTGATGGGTACTTAGATCTGGAGATGGTTGAATTTACTCTGCACGAAGTATTGGTTGCCTCTCTCAGTCAAGTAATGACAAAGAGCAATGCAAAGGGTATCAAAATAGTGAATGAGGTGGAAGAGCAGATCATGACGGAAACCTTGTATGGTGACAGTCTCAGGCTTCAACAGGTCTTAGCTGACTTCTTATTGATGTCCGTCACTTTTACACCCTCTGGAGGTAAGGTGGTTGTTGCAGCGTCTTTAACCAAAGATCAGTTGGGACAATCCGTCCATCTTGCCAATTTGGAGTTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTGCTAAACCAGATGTTTGGAAGTGATGTACAAGAATCTGAAGAAGGTGTTAGCCTGCTTATTAGTAGAAAACTGGTAAAGCTGATGAACGGAGATGTCCGTTATCTAAGGGAAGCAGGCAAATCATCCATCATTTTAACTGTTGAACTCGCTGCAGCCCACAAATCAAGGGCTTAA 3423 0.4359 MNSSALERELCVTKAKMSSSRPSQSSSNSGRSRHNARIIAQTTVDAKLHANFEESGTSFDYSNSVRISGAVNGQQQPRSDRVTTAYLHHIQKGTLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDNPALGIGTDIRAIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITRLQSLPRGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEITKQGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCCARHVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDVDSSDSIQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDALLGIISQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIRDISIWLSENHMDSTGLSTDSLAEAGLPGALALGDIVCGMAAVRISSKDMVFWFRSYTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESMAVTTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVEEAIGEHLLTLVEDSSTDRVKKMLDMALQGEEEQNVQFEIKTHASKIDSGPIRLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEVFGTHAACCRLKNQEAFVNFGIALNKAMTGLETEKVAFGFFSRNGKFVECLLSVSKKLDIEGTVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKGQIRNPLSGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQISKVLDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVMTKSNAKGIKIVNEVEEQIMTETLYGDSLRLQQVLADFLLMSVTFTPSGGKVVVAASLTKDQLGQSVHLANLEFSITHAGSGIPEALLNQMFGSDVQESEEGVSLLISRKLVKLMNGDVRYLREAGKSSIILTVELAAAHKSRA 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0263 1140 CDD PAS 777 888 IPR000014 -
Lele05g0263 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 202 IPR035965 -
Lele05g0263 1140 CDD PAS 644 750 IPR000014 -
Lele05g0263 1140 TIGRFAM sensory_box: PAS domain S-box protein 640 756 IPR000014 -
Lele05g0263 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 639 746 IPR035965 -
Lele05g0263 1140 SMART HisKA_10 910 971 IPR003661 GO:0000155|GO:0007165
Lele05g0263 1140 Gene3D PAS domain 780 891 - -
Lele05g0263 1140 FunFam Phytochrome 422 553 - -
Lele05g0263 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 780 886 IPR035965 -
Lele05g0263 1140 PRINTS Phytochrome signature 636 652 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 149 171 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 334 355 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 249 268 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 655 670 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 532 551 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 565 583 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 PRINTS Phytochrome signature 447 467 IPR001294 GO:0006355|GO:0009584
Lele05g0263 1140 Pfam GAF domain 234 417 IPR003018 GO:0005515
Lele05g0263 1140 Coils Coil 414 434 - -
Lele05g0263 1140 Pfam PAS fold 636 750 IPR013767 GO:0006355
Lele05g0263 1140 Pfam PAS fold 766 888 IPR013767 GO:0006355
Lele05g0263 1140 ProSitePatterns Phytochrome chromophore attachment site signature. 334 343 IPR013516 -
Lele05g0263 1140 SUPERFAMILY GAF domain-like 425 603 - -
Lele05g0263 1140 SMART gaf_1 234 427 IPR003018 GO:0005515
Lele05g0263 1140 Gene3D - 422 595 IPR043150 -
Lele05g0263 1140 SMART pas_2 765 834 IPR000014 -
Lele05g0263 1140 SMART pas_2 635 701 IPR000014 -
Lele05g0263 1140 MobiDBLite consensus disorder prediction 12 34 - -
Lele05g0263 1140 Gene3D - 215 578 IPR029016 -
Lele05g0263 1140 SUPERFAMILY GAF domain-like 214 414 - -
Lele05g0263 1140 Pfam Phytochrome region 430 605 IPR013515 GO:0006355|GO:0009584
Lele05g0263 1140 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1022 1132 IPR003594 -
Lele05g0263 1140 ProSiteProfiles PAS repeat profile. 633 703 IPR000014 -
Lele05g0263 1140 MobiDBLite consensus disorder prediction 16 34 - -
Lele05g0263 1140 PIRSF Phytochrome_conventional 15 1140 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele05g0263 1140 Pfam PAS fold 85 201 IPR013654 GO:0006355
Lele05g0263 1140 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1126 IPR036890 -
Lele05g0263 1140 ProSiteProfiles Histidine kinase domain profile. 917 1136 IPR005467 -
Lele05g0263 1140 Gene3D PAS domain 627 764 - -
Lele05g0263 1140 Gene3D - 973 1137 IPR036890 -
Lele05g0263 1140 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 234 407 IPR016132 -
Lele05g0263 1140 ProSiteProfiles PAS repeat profile. 766 818 IPR000014 -
Lele05g0263 1140 PANTHER TWO-COMPONENT HISTIDINE KINASE 913 1117 - -
Lele05g0263 1140 FunFam Phytochrome 629 760 - -
Lele05g0263 1140 CDD HATPase_Phy-like 1021 1132 IPR044767 -
Lele05g0263 1140 SMART HKATPase_4 1022 1134 IPR003594 -
Lele05g0263 1140 Gene3D PAS domain 90 337 - -
Lele05g0263 1140 ProSiteProfiles PAC domain profile. 706 762 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0263 Lele-ChrLele05 1481123 1485659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0263 17 1137 Histidine Kinase Gene Family AT1G09570 80.303 0.0 1897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0263 05 1481123 1485659 Lele14g2121 14 26747561 26756630 CCT
Lele05g0263 05 1481123 1485659 Lele15g0229 15 1294532 1295063 CCT
Lele05g0263 05 1481123 1485659 Lele16g0233 16 1301194 1305467 CCT
Lele05g0263 05 1481123 1485659 Lele05g0263 05 1481123 1485659 ECH
Lele05g0263 05 1481123 1485659 Lele07g0281 07 1530619 1540361 hybridization
Lele05g0263 05 1481123 1485659 Lele08g0084 08 495647 500568 hybridization