Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0259 ATGGGTATAAAGGGTTTAACAAGGCTTTTAGCGGACAATGCTCCAAAATCCATGAAAGAGCATAAATTTGAGAGCTATTTTGGCCGCAAAATTGCCATTGACGCCAGTATGAGCATCTACCAATTCCTAATTGTCGTGGGGAGAAGTGGGACTGAGATGCTCACCAATGAGGCTGGTGAAGTGACAAGTCATTTGCAAGGCATGTTTTCACGGACTATCAGACTTCTGGAAGCCGGAATAAAGCCAGTATATGTTTTTGATGGGAAGCCTCCGGAATTGAAGAAACAAGAGCTGGCCAAGCGTTTCTCGAAGAGGGCTGATGCTGGTGAGGATTTGTCTGAAGCCATGGAGGTGACAAAGCAACATAATGAAGACTGCAAAAGGCTTTTAAGACTCATGGGAGTGCCTGTGGTTGAGGCTCCCTCAGAAGCAGAAGCACAATGTGCTGCACTTTGCAAGTCAGGAAAGGCAAGTGTAGCTTCTGAAGACATGGATTCATTGACATTTGGAGCTCCTAAATTTCTTAGGCATTTGATGGATCCTAGCTCCAAGAAAATCCCAGTCATGGAATTTGAAGTTGTAAAGATTTTGGAGGAACTCAATCTTACCATGGACCAATTTATTGACTTGTGTATTCTTTCTGGGTGTGATTACTGTTATAGTATTCGAGGGATTGGGGGGCTGACTGCCTTGAAACTCATACGCCAACATGGCTCTATAGAGAATATACTGGAGAACATAAACAAAGAGAGGTACCAAATACCAGATGATTGGCCATATAAGGAGGCTCGGCAACTTTTTAAAGAACCGTCAGTCTTAACTGAAGAAGGGCAACTTGACCTTAAGTGGACTGCTCCAGATGAAGATGGGTTAATTACATTTTTGGTAAATGAGAATGGTTTCAATGCTGACAGGGTCGCAAAGGCAATAGAAAAGATTAAATCAGCAAAGAACAAGTCATCGCAAGGACGGTTGGAATCCTTTTTCAAGCCTGCAGTGAATCCATCTGCACCCATTAAACGGAAGGAAACACCAGCGAAGACTGCTAAGGAGAACAAAAAGGCCAAGGGTGGTGGTGGGAAGAAGAAGTAG 1092 0.4359 MGIKGLTRLLADNAPKSMKEHKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPELKKQELAKRFSKRADAGEDLSEAMEVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKSGKASVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVVKILEELNLTMDQFIDLCILSGCDYCYSIRGIGGLTALKLIRQHGSIENILENINKERYQIPDDWPYKEARQLFKEPSVLTEEGQLDLKWTAPDEDGLITFLVNENGFNADRVAKAIEKIKSAKNKSSQGRLESFFKPAVNPSAPIKRKETPAKTAKENKKAKGGGGKKK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0259 363 Hamap Flap endonuclease 1 [fen]. 1 330 IPR023426 GO:0016788
Lele05g0259 363 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 356 IPR006084 -
Lele05g0259 363 SMART HhH_4 204 237 IPR008918 GO:0003677|GO:0003824
Lele05g0259 363 SMART xpgineu 131 202 IPR006086 GO:0004518
Lele05g0259 363 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 332 IPR036279 -
Lele05g0259 363 ProSitePatterns XPG protein signature 2. 134 148 IPR019974 GO:0016788
Lele05g0259 363 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Lele05g0259 363 CDD H3TH_FEN1-Euk 205 273 - -
Lele05g0259 363 Pfam XPG I-region 134 217 IPR006086 GO:0004518
Lele05g0259 363 SMART xpgn3 1 108 IPR006085 GO:0004518
Lele05g0259 363 FunFam Flap endonuclease 1 1 206 - -
Lele05g0259 363 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lele05g0259 363 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lele05g0259 363 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Lele05g0259 363 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 130 147 IPR006084 -
Lele05g0259 363 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Lele05g0259 363 SMART 53exo3 29 293 IPR002421 GO:0003677
Lele05g0259 363 Gene3D - 206 269 - -
Lele05g0259 363 CDD PIN_FEN1 4 314 - -
Lele05g0259 363 SUPERFAMILY PIN domain-like 2 217 IPR029060 -
Lele05g0259 363 MobiDBLite consensus disorder prediction 317 363 - -
Lele05g0259 363 FunFam Flap endonuclease 1 202 269 - -
Lele05g0259 363 Gene3D - 12 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0259 Lele-ChrLele05 1468413 1471939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0259 1 344 Core DNA Replication Machinery Family AT5G26680 81.994 0.0 611