Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0254 ATGGCTAGAAAAAGAGTGTCTCTTGCATATATCTCCAACGACACTGCAAGGAAAACAACATATAAGAAAAGGAAGAGGGGTCTTTTCAAAAAGGCGAATGAACTAGCCACTCTCTGTGGGATCCAGGCATGTGCTGTTGTTCTCAGCTCCTATGAATCTACACCAGAGGTCTGGCCAGATTCAAGAGGAGCTCAACAGGCAATCGCAAGGTTTCAGAGGACACTTGGGCGGGATGAAACAAGGAATCTGAACCAGGAGAGTTTTACTAGGCAAAGGATTGCCAAAGTTAACGCCCGGCTTAATAAGCAGCGTTCAGAGAATCAAGAGAAGGTGACGGCGGTGGCTTTGTTCCAGTGCGTTAAAAGGGGAAGTATCGACGACAAGACGATAGTGGATACTGAGGCCATCGATCGCTTGGCCCGAGAGAACATATGCAGCATCAAGAAGAAGATGGAAGAGATTATTTGA 468 0.4658 MARKRVSLAYISNDTARKTTYKKRKRGLFKKANELATLCGIQACAVVLSSYESTPEVWPDSRGAQQAIARFQRTLGRDETRNLNQESFTRQRIAKVNARLNKQRSENQEKVTAVALFQCVKRGSIDDKTIVDTEAIDRLARENICSIKKKMEEII 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0254 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 CDD MADS_SRF_like 2 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele05g0254 155 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 PANTHER MADS BOX PROTEIN 3 122 - -
Lele05g0254 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Lele05g0254 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele05g0254 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0254 Lele-ChrLele05 1411452 1411919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0254 3 126 Type I MADS-box Gene Family AT1G65330 44.800 1.98e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele05g0254 SRF-TF 1.2e-17 No_clan