Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0243 ATGGGCGGAGGTGGAGCGACGCCGAACGCGGAGGCACAGTACTCCTCGGCGAAGATTTCTGTGTGGTGGGACATCGAGAACTGCCATGTCCCAAAGGGTTGCGATCCGCACGCGATCGCCCAGAACATCAGCTCGGCACTGGTTCAGATGAATTATTGTGGGCCCGTTTCCATCTCCGCCTACGGCGATACTACTCGCATCACCGCTTCTGTACAGCACGCTCTCTCCAGTACTGGAATCTCCCTCAACCATGTCCCGGCTGGTGTTAAAGATGCTAGTGATAAAAAGATCCTTGTTGATATGCTGTTCTGGGCTGTGGATAATCCTGCACCTGCTAATTATCTATTAATTTCTGGTGATCGAGACTTCTCTAATGCATTGCATCAATTGCGGATGAGGAGATATAATATCCTTCTTGCACAACCTCAGAAAGCATCTGCACCCCTAGTTGCAGCTGCCAAGAGTGTTTGGCTTTGGACTAGTCTGTTAGCTGGAGGACCTCCTCTAACAAATGGCGAATCACAACAATTTGGTAATAATAGCAACTTATCGAGTTCTGACACATTACAAATCCCAGTCTCTAGTTCTGTTCAGACAAAGCAGCAAAGGGATTCCTTTGCTGAAGTTCATTTAGGAAATCATAATCATAAACATAATCATAAATTTCCAAATGCTGGAAGGGGATTAGATTCTAGATACCAGGGTAAAACAACTTGGAGAAGCCCTAGTCAACCAAATGGACCCAGACCATTGAACCAACCAGTTGGGCTTCAAGAAAATCATAGCAGTATAAACTCTTACCGACCTGGCAACTACAGCCCAAATTTTTCCCCAAATGGATCTGCTCCAAATTTTGTGCATGGCAGTACAGGTCAGTTATGGAGCAATAGCAGCAATCTACCAGGCAATAGCCAAATGCCTTATTCACAGCCATTAAGACCCAACAGTTATCCAATGCAACCTCCTTTTGCACCTAACAATCAATATCCAACAAATTCCCATTCTTTTGCAACTCCAGCAGTGCCTCCTAGAGCTGGTGGACCCAACTTCACCTCTGGACCACTCACAAATGTGCCAGATATAGGTAATCTGAACATATCTGGATTGCCAAAACAGAATCCTATCAATAATGCTCCTCGTCCTGTAAGGTCAGCTGATGAACAAAATGGACATACAGTTCAGAACAATCAACAATTATACCGTGCTCACTCATCTGGTCCAGAATATCCACCTACACCTATGGCAGCAATGGGTAATAATAACCATCCTGGTAATGGCATGTGGGGATCTTCAGGATGTCCTAAACCTTCTGAATATGTACAAGGGCTTATAGGGGTTGTTTTGCTTGCCTTGAACACATTAAAAAATGAAAGGATAATGCCAACTGAGGCAAATATAGCTGATTGCATCCGTTATGGAGATCCTAAACACCGCAACACTGATGTTAAGAAGGCTTTGGACAGTGCTATTGAACAACAGATGGTGGTCAAACAGAATTTAGGTGCTTTGCAATTGTATATTGGTAAGAATGATAAACTTTGGAAGTGTGTAAATCCTATAGGTGGTAATCCCAATCAACACTCGAAAGAAATTTGGGATCAAATACAAAAGTTTTTAACCACTCCTTCTGGAAGACTTGCAATAATGGGTACTCAATGCAAATATGAAGCAGGTACTGTGATAAAGAATATGTGCTTAATAAATGTTTCTTTGGGAGATGTTCTTCAGATTTTGAACATAGTGATTGCTCATAAAAAATGGATCATGCATCGTCAGTCAGGATGGCAACCACTTACCATTACTCTACCTCAGGCAAACTCTGATTTAGGTGTCACAGCCGAAATAAATGCATAG 1854 0.4293 MGGGGATPNAEAQYSSAKISVWWDIENCHVPKGCDPHAIAQNISSALVQMNYCGPVSISAYGDTTRITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTNGESQQFGNNSNLSSSDTLQIPVSSSVQTKQQRDSFAEVHLGNHNHKHNHKFPNAGRGLDSRYQGKTTWRSPSQPNGPRPLNQPVGLQENHSSINSYRPGNYSPNFSPNGSAPNFVHGSTGQLWSNSSNLPGNSQMPYSQPLRPNSYPMQPPFAPNNQYPTNSHSFATPAVPPRAGGPNFTSGPLTNVPDIGNLNISGLPKQNPINNAPRPVRSADEQNGHTVQNNQQLYRAHSSGPEYPPTPMAAMGNNNHPGNGMWGSSGCPKPSEYVQGLIGVVLLALNTLKNERIMPTEANIADCIRYGDPKHRNTDVKKALDSAIEQQMVVKQNLGALQLYIGKNDKLWKCVNPIGGNPNQHSKEIWDQIQKFLTTPSGRLAIMGTQCKYEAGTVIKNMCLINVSLGDVLQILNIVIAHKKWIMHRQSGWQPLTITLPQANSDLGVTAEINA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0243 617 Pfam NYN domain 18 154 IPR021139 GO:0004540
Lele05g0243 617 PANTHER LIMKAIN B LKAP 14 497 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele05g0243 617 CDD PIN_limkain_b1_N_like 18 142 - -
Lele05g0243 617 MobiDBLite consensus disorder prediction 234 313 - -
Lele05g0243 617 MobiDBLite consensus disorder prediction 211 339 - -
Lele05g0243 617 MobiDBLite consensus disorder prediction 370 429 - -
Lele05g0243 617 Pfam OST-HTH Associated domain 552 608 IPR025677 -
Lele05g0243 617 Gene3D - 9 161 - -
Lele05g0243 617 MobiDBLite consensus disorder prediction 370 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0243 Lele-ChrLele05 1358391 1361272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0243 10 201 C2H2 Transcription Factor Family AT5G61190 70.103 1.03e-83 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0243 05 1358391 1361272 Lele06g0059 06 391977 394885 ECH
Lele05g0243 05 1358391 1361272 Lele05g0243 05 1358391 1361272 ECH
Lele05g0243 05 1358391 1361272 Lele07g0255 07 1391416 1394263 hybridization
Lele05g0243 05 1358391 1361272 Lele08g0059 08 364683 367553 hybridization