Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0222 ATGGACCATGTTTACAGGTTAAGCACCAAGGAATCATGCCGTTCGGAAGATGTAAGAGTCGGTGACGTCTCTTCCTCTTCCGATCAGTTGCATCTAGCTTCGGTGGCCAATAACTACGTACATCTGCAAGTGCCTGATTCGGAAAGAACCGGGTCTGAAGTGCCGTCCGACCAGTTCATCAAGACCCAAATCACCAACCATCCTCTTTATCCCGATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACGGGCGTCGCTTCTGGAAGAAATGAGCCGTGAAAATCACCCCATCCGTGCTCAGCGTCAGATAGGGGATGATCCTCAACTTGACGATTTCATGGAATCATACTGCGAAGTTCTTCTAAGATATAAAGAGGAGTTATCGAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAACATCGAATCCCAGCTCCACAACCTTTGCAAGGGAACGTTAACAAATTTAACGGGATGTCTTTCCGAGGAGGCAGGTGTGACTTCAGTAGAGGAACTAAGTTGTGGAGAGGTGGAAGCTGTTGAAGGTGGTGGATCTTGTGGCAGTTGGCAAGCTGATAAAGAGATCAAAGAGATGCTACTTCGTAAGTACAGCGGCTATCTTAGCAATCTGCGGAAGGAGTTCTTGAAGAAAAGGAGAAGTGGTAAGCTTCCAAAAGATGCAAGGATGACACTACTCAATTGGTGGAACACCCACTACAGATGGCCCTATCCCACGGAGGAGGAGAAAGTGAGGCTATCGGAAACGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGGCACTGGAAGCCATCTGATGATATGCGATTTGCCGTCTTGGAGGGTGTAAGTGGGGGCCCCTTTGGACCCCCTTTCTGCTTCAATGCTTCCTCACCTCCACCTCCACCTCCACCTCATTGA 957 0.4796 MDHVYRLSTKESCRSEDVRVGDVSSSSDQLHLASVANNYVHLQVPDSERTGSEVPSDQFIKTQITNHPLYPDLLSAYIECQKVGAPPERASLLEEMSRENHPIRAQRQIGDDPQLDDFMESYCEVLLRYKEELSRPFNEATLFLSNIESQLHNLCKGTLTNLTGCLSEEAGVTSVEELSCGEVEAVEGGGSCGSWQADKEIKEMLLRKYSGYLSNLRKEFLKKRRSGKLPKDARMTLLNWWNTHYRWPYPTEEEKVRLSETSGLNQKQINNWFINQRKRHWKPSDDMRFAVLEGVSGGPFGPPFCFNASSPPPPPPPH 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0222 318 Gene3D - 225 287 - -
Lele05g0222 318 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Lele05g0222 318 SUPERFAMILY Homeodomain-like 222 290 IPR009057 -
Lele05g0222 318 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Lele05g0222 318 CDD homeodomain 223 284 IPR001356 GO:0003677
Lele05g0222 318 Pfam KNOX2 domain 108 155 IPR005541 GO:0003677|GO:0005634
Lele05g0222 318 SMART ELK_2 200 221 IPR005539 GO:0003677
Lele05g0222 318 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Lele05g0222 318 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Lele05g0222 318 Pfam ELK domain 200 221 IPR005539 GO:0003677
Lele05g0222 318 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Lele05g0222 318 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Lele05g0222 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 289 - -
Lele05g0222 318 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Lele05g0222 318 SMART HOX_1 222 287 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0222 Lele-ChrLele05 1225203 1228340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0222 19 300 Homeobox Transcription Factor Family AT1G23380 48.443 3.04e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele05g0222 KNOX2 8.7e-24 No_clan