Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0210 ATGGAGCTTGTAGTCTCGTTTAACGAGAGGAAACAAGCCGTTACCCGCCTTTATCAGCTGGCGCCAGGTTTGAAAGGATGGTTCGGAGCCGAAGCTAGAGGCTTAGAAAACCCAGAGTTAATTGAGGATGATGGGATACGGTTTGAACGTTCTGAGGGGCGGATGGCTATTTTGGTAATTATGGAGCGAGACCTGCAGGAGGTCGCAGGGATGCGGACGCCATTTGAACGTTCTCACAACTATAGCTCAATCTTTTTCCCTTCCAAAGATTCCCCCTTCAACTCTATATTGTATCAGATGGTAAGGGGGGGAGAACTTGGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGCTCTGATGATTCGGATGAGGACTATGTGGTTCCAGACGAAGGTAGAGATTTGTCTGATTGTTCGGAGGATTCATTGTCTTCTTTAGATGGATGTGCATCCGAGGAGAGTTTTGGTAGCTTTGTAGAGGATGAGGAGGAGGAAATTGAAGTAAGGAGGAAATTCAATAGATCCAAGTCAAAAAATGGCATTTGTGGTCGGCGGAAAATTGGCAGGAAACCCTCACACCAGAGAGGAAGGATAGCTTATTCACATCAACTAGAAGAAGATAAGGAAGAAGAACTAGAACGAGAGGAAGAAGAAGAAGAACGAGAACAAGAAGAGGAAGATTATGAAGGTACAGATGAATATGAGGAATATGATGCCAATGAAGATTTTGATTGTGATGAGGATGAGGAATTTACAGCCGAGGAAGAAGATTACTCAGATGAGGAAGAAATAAAGGGGAGACAGAAGGAAAGTAATGGCATAAAAATGGGCAAGAAGGTTGCGCAGAAGCGGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGAAAGAATTCTAGAGCCGCAAGGAAGCCCTCGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAACTTGAGGAGGAAAGCAAATTATGATGATGAGGGTGATTTTTTAGATAACAGTCCTACCATCAGAACCAAGAGTAAGAAAAAACCAGGACGAAAAAGGAGAAGACTAATCGTTGATTCAGATTCGTACTCAGATTGTGTGTCATCTAGATCATCTGATTATGGGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGATGTTTGAGAATTAATTTGGGGAGTTCATCCCTTTTGACAAAAAATGAAGAGGATGGAGTCCATGAAGATCTACATCAGCAAAGAAAGCCTCCAGCCCGCAAAGGTAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGCGGATTTAAAAAGTAAGCCAGGAAAGCAAGTGTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACACTTTTTTTGTTTTGCTTGCATTATGGAATGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATTAGTAAGCCTGCACGATCAACAACAGCGGGGGTTGATTTGAGAGGATCAGTTATACAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTAATTTGTTCAGAGTGCTGTCAAGGTGGAGATGATGACCTCATGTTACTGTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGGGAGGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAGTTCAGGAAGGAGTGGCTGATTCAAGGGCAACAACAGTTCAGAGCCTACCTGGTAGACCATCCCCTGCTGTACGTGCAAGAGAAATTATTGACCTCAACTTGGTGTCCTCACCGCGTGCAGCTTTTAGTCAAGGGTTGGGGAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCCGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGACTTCTGCTGCTGGTCGATCTAATGGCATTTCAGCTACCAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCAAAGTAGGGTAACAACCGCTCAAGACACAAGGACACAGAATGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTATGCAACAGTTCCTCCACACTAATGCAGAATGGGGATAATTTCTCTATGAGAATAAGCAATTCAAGAATGCCAGCAGTTCAAGATTCAGCTCCATTTACCAACAGAGCTGTGAATGGGGCATTTTGGCCTGGTCTTGTGGGGACGCCTCCTGTATCAGATTATGAACAAGTCCATCAGCTTAGGAGCAGTTCGCACATTGTTGCTGATGGTACCATGTCCCCTGCTATTAGAGAAGAGAGTAACTTTCACATAGTAAAGGAACAATTGTCATCACTGGTTAAACGCCATCTTATGGGCTTGTCACAAAATATTGATTTAGGCAACAGTACCTTCAAGGACATTGCCAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGCGAGGTTTGCGCTGTGCCCCCTCCTTCAGCCTGTCCCCACATTGAACTGATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGACGTGGTTAAGAGGACCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2820 0.4394 MELVVSFNERKQAVTRLYQLAPGLKGWFGAEARGLENPELIEDDGIRFERSEGRMAILVIMERDLQEVAGMRTPFERSHNYSSIFFPSKDSPFNSILYQMVRGGELGGKRNFRKRVRSKEGGSDDSDEDYVVPDEGRDLSDCSEDSLSSLDGCASEESFGSFVEDEEEEIEVRRKFNRSKSKNGICGRRKIGRKPSHQRGRIAYSHQLEEDKEEELEREEEEEEREQEEEDYEGTDEYEEYDANEDFDCDEDEEFTAEEEDYSDEEEIKGRQKESNGIKMGKKVAQKRASVTYTRGRKRRKNSRAARKPSRKKRRKNGGLNLRRKANYDDEGDFLDNSPTIRTKSKKKPGRKRRRLIVDSDSYSDCVSSRSSDYGYTISEEEREQVREAEELCGCLRINLGSSSLLTKNEEDGVHEDLHQQRKPPARKGKEKIEEHQGRKGKDKVADLKSKPGKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECCQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADSRATTVQSLPGRPSPAVRAREIIDLNLVSSPRAAFSQGLGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMTSAAGRSNGISATNSTSNLYGSQNDQSRVTTAQDTRTQNVGTSSYHSFFEERLCNSSSTLMQNGDNFSMRISNSRMPAVQDSAPFTNRAVNGAFWPGLVGTPPVSDYEQVHQLRSSSHIVADGTMSPAIREESNFHIVKEQLSSLVKRHLMGLSQNIDLGNSTFKDIARISLNTILAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRTMDTRMSQWLRLGL 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0210 939 PANTHER F18C1.6 PROTEIN 100 930 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 322 343 - -
Lele05g0210 939 Pfam Ring finger domain 456 499 IPR001841 -
Lele05g0210 939 SUPERFAMILY FYVE/PHD zinc finger 520 596 IPR011011 -
Lele05g0210 939 MobiDBLite consensus disorder prediction 266 281 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 112 153 - -
Lele05g0210 939 ProSitePatterns Zinc finger RING-type signature. 476 485 IPR017907 -
Lele05g0210 939 MobiDBLite consensus disorder prediction 112 126 - -
Lele05g0210 939 ProSiteProfiles Zinc finger RING-type profile. 457 499 IPR001841 -
Lele05g0210 939 MobiDBLite consensus disorder prediction 292 321 - -
Lele05g0210 939 SMART PHD_3 550 595 IPR001965 -
Lele05g0210 939 Coils Coil 204 238 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 213 265 - -
Lele05g0210 939 SMART ring_2 457 498 IPR001841 -
Lele05g0210 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 600 IPR013083 -
Lele05g0210 939 MobiDBLite consensus disorder prediction 180 372 - -
Lele05g0210 939 ProSiteProfiles Zinc finger PHD-type profile. 548 597 IPR019787 -
Lele05g0210 939 SUPERFAMILY RING/U-box 456 505 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 698 734 - -
Lele05g0210 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 517 IPR013083 -
Lele05g0210 939 CDD RING-HC_Topors 457 499 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 414 446 - -
Lele05g0210 939 MobiDBLite consensus disorder prediction 180 200 - -
Lele05g0210 939 Pfam PHD-finger 551 596 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0210 Lele-ChrLele05 1134655 1142737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0210 545 594 C2H2 Transcription Factor Family AT3G01460 48.077 5.56e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele05g0210 PHD 1.1e-07 CL0390