Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0205 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCTGTGCACAAACTTGAGAAGGAGTCTGGGTTTTTCTTCAACATGAAGTACTTTGAGGAAAAAGTCCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGACAGGGTTTACCAAAGTTGATGATAATCGATACTCCATGAAGATTTTCTTTGAAATCAGAAAACAAAAATATCTGGAAGCGCTCGATAGGCAAGACAAGGCAAAGGCTGTTGAGATACTAGGAAATGATTTGAAAGTGTTCTCCACTTTCAATGAGGATCTATATAAAGAAATTACCCAGCTGTTAACTCTTAATAATTTCAGGGAGAATGATCAGCTGGCCAAATATGGTGACACTAAAACAGCTCGAAGCATTATGTTGATAGAGCTGAAAAAATTGATAGAAGCAAATCCTCTATTTCGTGATAAGCTTCTCTTCCCTACTCTCAAGTCATCGAGGTTGAGGACGTTAATCAATCAATGCTTGAACTGGCAGCATCAGCTTTGCAAAAATCCTTGGCCAAACCCAGATATTAAGACTTTATTTACAGATCACACATGTTCACCTCCTAATGGTCTTTTAACACCCACACCCGTCAATCTTCCAGTTGCTGCAGTAGCAAAGCCTGCTGTTTATACATCACTTGGTGCTCATGGTTCCTTCCCACCTCCTCCTGCTGCTGCTGCTAATTCCATAGCTGGTTGGATGGCAAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTTACTGCATCATCCATGCCTGTTTCTCAGAATCAAGTGCCCATCTTGAAACGTCCAAGAACACCTCCGGCAGCCCCTGGCATGGTTGATTATCAGAATTCTGACCATGAGCAGTTAATGAAAAGGCTTCGACCTGTTCATTCTGTAGAGGAGGTTTCCTATCCTACAGCTCGACAAGCTTCTTGGTCACTGAATGATCTGCCAAGAACAGTGGATATGACACTGCATCAAGGATCCTCTGTTAACAGCATGGACTTTCACCCTTCACACCAGACATTACTTCTTGTTGGTTCTACTAATGGTGAAATTGCCCTATGGGAACTCGGGTTACGGGAGAGGTTGGTTTCAAAGCCATTCAAGATCTGGGATCTATCAGCATGCTCATTGCCGTTTCAGGCAGCAGTCGTCAAAGATACGCCAATTTCTGTCAGCTGTGTTATGTGGAGCCCGGAGGGAAATTTTGTTGGTGTTGCATTTAGCAAACATTTGGTTCACTTGTATGCCTATACTGGGTCAAATGAGCTGAGCCAGCGATTGGAGATTGATGCCCATACTGGTGGCGTGAATGACTTGGCATTTGCTCATCCATATAAGCAACTATGTATTCTGACCTGTGGTGATGATAAGATGATAAAGGCGTGGGAGTTAAATGGACGAAAACTATTCAACTTTGAGGGGCATGAAGCACCTGTCTATTCCATCTGTCCTCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCGTTGATGGAAAAATAAAGGCCTGGTTGTATGACAATATGGGTTCCAGAGTTGACTATGATGCTCCGGGTCACTGCTGTACCACAATGCTTTACAGTGCTGATGGGAGTAGATTGTTTTCTTGTGGAACAAGTAAAAATGGAGAATCTTTCTTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGTCGTATAATGGGTTCAGAAAGAAATCAAATGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGATGGCCAAATAAAGTTCTGGGATATGGACAATGTTAATCTTCTAACAAGCACTGATGCAGAGGGTGGACTACAGAGTCTTCCACGTTTGAGGTTTAATAAGGAAGGAAATCTTCTTGTGGTTACTACTGCGGACAATGGATTCAAGGTCCTTGCAAATGCTACTGGTCTGAGATCCTTAAGGGCAATGGAATCTCCAGCATTTGAAGCATTGAGATCTCACATGGAATCAGCTTCAAATAAGGTTTCTGGCTCCCCTGCTGTAAATGTCAGTCCTGGCAACTGTAAAGTAGAGAGGAGCTCGCCTGTCAGGCCATCTCCAATCCTTAACGGAGTTGACCCTATGGGTCTAAGTTTGGAGAAACCTAGAACTATGGAAGATGTGATAGATAGAACTAAACCATGGCAGCTATCTGAAATTTCGGAAGCTATCCAATGTCGGTTAGTTACAATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAGTTCTGGTGCTGGTGTTTTGGCACTTGGTTCAAATGGTATTCAGAAACTGTGGAAGTGGACTCGTAATGAACAGAATCCTGCTGGGAAGGCCACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATATTTCTGGTGTCAACCTTGAAGAAGCAGTTCCCTGCGTTGCACTCTCAAAGAATGACTCTTACGTTATGTCCGCCTGTGGTGGGAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACGTTCATGCCGCCACCTCCTCCCTCTACTTTCCTGTCTTTCCACCCACAGGATAACAACATCATAGCCATTGGGATGGAGGATTCTACGATTCACATTTATAATGTTAGGGTGGATGAGGTCAAATCGAAATTAAAGGGTCACCAGAAGCGTATTACTGGTTTAGCCTTTTCAACCAGTCTTAACATACTGGTCTCATCCGGTGCTGATGCCCAACTTTGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATGACAATACAACTACCTGCGGGAAAGTCTCCTGTCGGTGATACCAGAGTCCAGTTCCATTCTGATCAACTCCGCTTATTGGTAGTTCATGAGACTCATTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGACAGTGGCTTCCACAAGATACTCTGTCTGCTCCCATATCATATGCAACTTATTCAAGCAACAGTCTGTTAATATATGCTACCTTTTTTGATGGTAACGTTGGGGTCTTTGATGCTGATAGCTTGAGGCTAAGATGTCGTATTGCTCCATCAGCATACTTATCACAGGCAGCTTTAAGAGCAAGCCAAGCTGTGTACCCTCTGGTTGTTGCAGCTCATCCACAAGAGCCCAACCAATTCGCTGTTGGATTGACTGATGGATCCATCAAAGTAATAGAACCCTCTGAATCAGAGGGCAAATGGGGATCTACTCCACCCGTAGATAATGGAGTGCTAAACGGTAGGCAAGGGCAATCATCTACTTCAAATATTCACACTCCTGATCAAGCACAAAGATAA 3387 0.4319 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILGNDLKVFSTFNEDLYKEITQLLTLNNFRENDQLAKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQCLNWQHQLCKNPWPNPDIKTLFTDHTCSPPNGLLTPTPVNLPVAAVAKPAVYTSLGAHGSFPPPPAAAANSIAGWMANASASSSVQAAVVTASSMPVSQNQVPILKRPRTPPAAPGMVDYQNSDHEQLMKRLRPVHSVEEVSYPTARQASWSLNDLPRTVDMTLHQGSSVNSMDFHPSHQTLLLVGSTNGEIALWELGLRERLVSKPFKIWDLSACSLPFQAAVVKDTPISVSCVMWSPEGNFVGVAFSKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPYKQLCILTCGDDKMIKAWELNGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHCCTTMLYSADGSRLFSCGTSKNGESFLVEWNESEGAIKRSYNGFRKKSNGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNLLTSTDAEGGLQSLPRLRFNKEGNLLVVTTADNGFKVLANATGLRSLRAMESPAFEALRSHMESASNKVSGSPAVNVSPGNCKVERSSPVRPSPILNGVDPMGLSLEKPRTMEDVIDRTKPWQLSEISEAIQCRLVTMPESADASSKVVRLLYTSSGAGVLALGSNGIQKLWKWTRNEQNPAGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCVALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPPSTFLSFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSMTIQLPAGKSPVGDTRVQFHSDQLRLLVVHETHLAIYDASKMDRIRQWLPQDTLSAPISYATYSSNSLLIYATFFDGNVGVFDADSLRLRCRIAPSAYLSQAALRASQAVYPLVVAAHPQEPNQFAVGLTDGSIKVIEPSESEGKWGSTPPVDNGVLNGRQGQSSTSNIHTPDQAQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0205 1128 MobiDBLite consensus disorder prediction 1105 1128 - -
Lele05g0205 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Lele05g0205 1128 SMART WD40_4 998 1034 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 903 942 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 573 613 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 821 857 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 483 524 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 1048 1089 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 527 570 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 860 900 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 438 481 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 334 373 IPR001680 GO:0005515
Lele05g0205 1128 SMART WD40_4 395 434 IPR001680 GO:0005515
Lele05g0205 1128 Gene3D - 407 687 IPR015943 GO:0005515
Lele05g0205 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lele05g0205 1128 MobiDBLite consensus disorder prediction 1090 1128 - -
Lele05g0205 1128 SMART Lish 4 36 IPR006594 GO:0005515
Lele05g0205 1128 MobiDBLite consensus disorder prediction 684 722 - -
Lele05g0205 1128 Pfam WD domain, G-beta repeat 909 942 IPR001680 GO:0005515
Lele05g0205 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 622 IPR001680 GO:0005515
Lele05g0205 1128 FunFam Topless-related protein 3 729 963 - -
Lele05g0205 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 945 - -
Lele05g0205 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 468 947 IPR011047 -
Lele05g0205 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 951 IPR001680 GO:0005515
Lele05g0205 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lele05g0205 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 382 IPR001680 GO:0005515
Lele05g0205 1128 Gene3D - 322 385 IPR015943 GO:0005515
Lele05g0205 1128 SUPERFAMILY WD40 repeat-like 328 527 IPR036322 GO:0005515
Lele05g0205 1128 MobiDBLite consensus disorder prediction 684 701 - -
Lele05g0205 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1110 IPR027728 GO:0006355
Lele05g0205 1128 SMART ctlh 34 92 IPR006595 -
Lele05g0205 1128 Gene3D - 763 1097 IPR015943 GO:0005515
Lele05g0205 1128 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 907 1098 IPR011044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0205 Lele-ChrLele05 1102208 1111879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0205 446 654 Miscellaneous Gene Families AT5G08390 24.883 6.96e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2248 13 28668746 28670362 Lele05g0205 05 1102208 1111879 CCT
Lele14g2182 14 27025097 27027502 Lele05g0205 05 1102208 1111879 CCT
Lele15g0164 15 1007329 1008940 Lele05g0205 05 1102208 1111879 CCT
Lele16g0173 16 1022836 1025853 Lele05g0205 05 1102208 1111879 CCT
Lele05g0205 05 1102208 1111879 Lele05g0205 05 1102208 1111879 ECH
Lele05g0205 05 1102208 1111879 Lele07g0207 07 1113353 1122884 hybridization
Lele05g0205 05 1102208 1111879 Lele08g0013 08 68697 78267 hybridization