Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0203 ATGGAGCATCTCTCGTCCATGTTCAATGGATTGGCAAGGTCTTTCTCAATAAAGAAAGCCAAGAGTTCTGGGAAATGTGATGGAAGAGAATCCGCCGAAGCAATGGCCAAGGAAGCTAAGAAAAATGCCCAGATTCTCCGCACCTCCGGCACCGTTCATGTCCAGGGCTCTAACAACTTCGCCTCAATTTTTTCCAAGAAAGGCCAGAAAGGAGTCAACCAGGATTGTTGCATAGTGTGGGAGGAATTTGGATGTCAAGAGGACATGATGTTCTGTGGGATATTTGACGGCCACGGGCCATGGGGTCACTTCGTGGCTAAGAGAGTAAGAGAGGCAATGGCTCCATCTCTCTTGTGTAACTGGCAGGAGACACTTGCCCAGACCTCGCTCGATCCTGATTTCGACTTAGAGGATGAGAAAAAGCAACACCCTTTCAATATATGGAAGCACTCCTACTTGAAGACTTGTGCCGCCATTGATCACGAGCTAGGGCGCTCTCGCAAAATCGATTCTTTCTACAGCGGAACCACTGCTCTCTCCATTGTTCGACAGGGTGAACTAATCGTTGTGGCAAATGTGGGTGACTCTCGAGCTGTATTAGCCACAACATCGGACGATCATAGCTTAGTGCCAGTACAGCTGACTGTTGATTTCAAGCCCAATCTGCCTGATGATGGCTTCGCAGACGAGTCAGAGCGTATAATTCAGTGTCAGGGACGAGTGTTCTGCTTAGAAGATGAACCGGGAGTTCACAGAGTGTGGCTGCCGGACGGAGAGTCACCGGGATTGGCCATGTCCAGAGCCTTCGGAGACTACTGCGTGAAGGGGTATGGTGTTATTTCTGTTCCTGAGGTGTGGGATGTGATACCGAATGAAGAAGCAGTGCGAATAGTGGCTTCGACAGAGGACAGAGGGAAGTCGGCAAGAAGATTGGTGGAGTGTGCGGTGGCGGCATGGAAGCGCAAGAGATGGGGCTTTGCCGTGGACGACATTTCTGCAATTTGTGTATTCTTGCATCCTCCTCCTCCTCCATCTCTCCTCAGAGAGGATTGA 1053 0.5024 MEHLSSMFNGLARSFSIKKAKSSGKCDGRESAEAMAKEAKKNAQILRTSGTVHVQGSNNFASIFSKKGQKGVNQDCCIVWEEFGCQEDMMFCGIFDGHGPWGHFVAKRVREAMAPSLLCNWQETLAQTSLDPDFDLEDEKKQHPFNIWKHSYLKTCAAIDHELGRSRKIDSFYSGTTALSIVRQGELIVVANVGDSRAVLATTSDDHSLVPVQLTVDFKPNLPDDGFADESERIIQCQGRVFCLEDEPGVHRVWLPDGESPGLAMSRAFGDYCVKGYGVISVPEVWDVIPNEEAVRIVASTEDRGKSARRLVECAVAAWKRKRWGFAVDDISAICVFLHPPPPPSLLRED 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0203 350 Gene3D - 42 339 IPR036457 -
Lele05g0203 350 SUPERFAMILY PP2C-like 52 341 IPR036457 -
Lele05g0203 350 SMART PP2C_4 54 336 IPR001932 -
Lele05g0203 350 ProSiteProfiles PPM-type phosphatase domain profile. 60 338 IPR001932 -
Lele05g0203 350 CDD PP2Cc 59 338 IPR001932 -
Lele05g0203 350 Pfam Protein phosphatase 2C 81 285 IPR001932 -
Lele05g0203 350 PANTHER PROTEIN PHOSPHATASE 38 336 - -
Lele05g0203 350 Coils Coil 29 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0203 Lele-ChrLele05 1095429 1096886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0203 1 339 PP2C-type Phosphatase Gene Family AT3G05640 63.712 6.66e-165 462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2250 13 28677737 28680628 Lele05g0203 05 1095429 1096886 CCT
Lele14g2184 14 27029900 27033086 Lele05g0203 05 1095429 1096886 CCT
Lele15g0162 15 999038 1000200 Lele05g0203 05 1095429 1096886 CCT
Lele16g0171 16 1017505 1018761 Lele05g0203 05 1095429 1096886 CCT
Lele05g0203 05 1095429 1096886 Lele05g0203 05 1095429 1096886 ECH
Lele05g0203 05 1095429 1096886 Lele07g0206 07 1104465 1105912 hybridization
Lele05g0203 05 1095429 1096886 Lele08g0012 08 62693 64118 hybridization