Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0172 ATGTCGAACAACACAAGCGGCGACAGTGGAGAAGGCGGCGCCAAACGGCCGGCGCAGATACTCGGTCAGTTTCACAGTCCAAATTCTCTTACTTCAACGACGACAACTAATAGCAATGTTTCCAACACACCTCCACCTCCTAAGAAGAAGAGAAACCTACCCGGAAATCCAGATCCAAGCGCCGAGGTGATAGCTCTATCACCAAACACCCTAATGGCCACAAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTACAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGAAGCACCACAGATGTTCGAAAGAGGGTCTACGTTTGTCCTGAACCATCGTGCGTACACCACAACCCAGCCCGAGCACTGGGTGATCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAGGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGGAGAGATAGCTTCATCACCCATAGAGCTTTCTGTGACGCACTGACTGAGGAGAATAACAAAGCCAACGAAAGACAAACAATGCCAGGAATGAGCCCGCCGAGCTTTCGGGCGGGGCGTCAAATTCAGAACCTGGTTTCTTCATTACCAGTGAATAATGCCAATAATATGCCGAACCCACAAGCTGGGAATATGGATAACAACAACAGCAATAATCATCCAATGTCGTCACTGCTTCAGGAGCTCATGCCAATGCCTGCAAACAGACCCTTTAACCATTGTCTGAATGCAGGAAATCTATTCACTAGAAGCCTCTCTTCTACTTCCTCAGCACCTCCTCTTCAACTAAATTCAAATTCGCCCAACCTCTTCGAAGAAAATGGGCAGCACCAACTACCGCTACCAGCAGCCGCCGCCGCTTCCTCACAGCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCCCAAATGGGTGCAACTGTGAGCAACTCGTCGTCCATGGCAGAAAAGGGCTTTGTGACGAGCATGGCGCCTCCGTCATATGGTCCAAACGTCGGGCTTTCCTTCATGAACCACTATATGCAGAATGGGCAAGAGGATCATATCTCCGGCCAGTATTTAAGTGCGAACGGGAGCGTGGGAATGAACGGCGTGGATATGTTTAACGCTATCATGGACCAGAGCAAAGCTTTCTCGAAGATCATAGAGGAGAATAACCGAAGCAATAATGGAGTTTTGCATGGTGGGGAAAGTGGTGGGGCTATTAAGGGAAGCGGGGATGTGCTGACTCTGGACTTCATGGGAATCGGAGGAGGTGGACATGGAAGTTTCTTCGGAAACCAACACCAACCGCCCGGTGACAAGGGCGCAATTAGAGGAGATGAGATCTGGAGAAATTGGTCTATCAAGAATGCAGGATTTGAATCATTCTCAGCGACAAGCAGCATCAACTGA 1521 0.4924 MSNNTSGDSGEGGAKRPAQILGQFHSPNSLTSTTTTNSNVSNTPPPPKKKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTTDVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKANERQTMPGMSPPSFRAGRQIQNLVSSLPVNNANNMPNPQAGNMDNNNSNNHPMSSLLQELMPMPANRPFNHCLNAGNLFTRSLSSTSSAPPLQLNSNSPNLFEENGQHQLPLPAAAAASSQLMSATALLQKAAQMGATVSNSSSMAEKGFVTSMAPPSYGPNVGLSFMNHYMQNGQEDHISGQYLSANGSVGMNGVDMFNAIMDQSKAFSKIIEENNRSNNGVLHGGESGGAIKGSGDVLTLDFMGIGGGGHGSFFGNQHQPPGDKGAIRGDEIWRNWSIKNAGFESFSATSSIN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0172 506 MobiDBLite consensus disorder prediction 1 61 - -
Lele05g0172 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Lele05g0172 506 MobiDBLite consensus disorder prediction 22 46 - -
Lele05g0172 506 FunFam protein indeterminate-domain 12-like 56 124 - -
Lele05g0172 506 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Lele05g0172 506 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Lele05g0172 506 Pfam Zinc-finger double-stranded RNA-binding 77 99 IPR022755 -
Lele05g0172 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 465 IPR031140 -
Lele05g0172 506 SMART c2h2final6 118 148 IPR013087 -
Lele05g0172 506 SMART c2h2final6 153 173 IPR013087 -
Lele05g0172 506 SMART c2h2final6 77 99 IPR013087 -
Lele05g0172 506 Gene3D Classic Zinc Finger 132 212 - -
Lele05g0172 506 Gene3D Classic Zinc Finger 56 122 - -
Lele05g0172 506 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0172 Lele-ChrLele05 924818 927274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0172 48 366 IDZ Gene Family AT3G50700 54.217 7.20e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele05g0172 zf-C2H2_jaz 7.4e-05 CL0361