Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0170 ATGGAGGATGAGAGATTGTTGCCGATAGCGAATGTGGGAAGGATAATGAGGCAAATACTGCCAGGGAGTGCGAAGATCTCAAAAGAAGGGAAGCAGATAATGCAAGAATGTGCCACTGAATTCATAAGCTTTGTGACAGAGGAAGCTTCTGACAAGTGTCACAAAGAGAATCGCAAGACCGTCAACGGGGATGACATCTGTTGGGCCCTCAGTGCTCTAGGGTTTGATAACTATGCTGAGGCCATTGCCAGGTACTTGCATAAATACAGGCAAGCTGAGAGGGACAAATTGATCAATAACAAAACGCAACAGTTGCTTCAAAACTCTTCTTCCGCCACAAAATCAGCTAGCTTCGTCGCCCAAAGCGACCAGCACCAAGCTGAAGAGAATAGGGTTTCTGAAGAAAAGGCTCCTACAACTAATCGATCTCCATGA 435 0.4598 MEDERLLPIANVGRIMRQILPGSAKISKEGKQIMQECATEFISFVTEEASDKCHKENRKTVNGDDICWALSALGFDNYAEAIARYLHKYRQAERDKLINNKTQQLLQNSSSATKSASFVAQSDQHQAEENRVSEEKAPTTNRSP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0170 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 70 IPR003958 -
Lele05g0170 144 MobiDBLite consensus disorder prediction 101 126 - -
Lele05g0170 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele05g0170 144 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Lele05g0170 144 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Lele05g0170 144 PRINTS CCAAT-binding transcription factor subunit A signature 34 52 - -
Lele05g0170 144 Gene3D Histone, subunit A 1 140 IPR009072 GO:0046982
Lele05g0170 144 MobiDBLite consensus disorder prediction 101 144 - -
Lele05g0170 144 Coils Coil 75 95 - -
Lele05g0170 144 SUPERFAMILY Histone-fold 3 104 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0170 Lele-ChrLele05 904345 904779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0170 1 101 CCAAT-HAP3 Transcription Factor Family AT1G09030 75.490 5.14e-55 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele05g0170 CBFD_NFYB_HMF 5.9e-25 CL0012