Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0087 ATGGAAGCCTCTAGAAGGGGAAGGCAGGAGCTTTTGTTTATTGTTTTGAGGCTTGATATTATTATTTCCTCAGAACAAGTTTGGATTCAGGAAGTTATGCTGCCTCTGGGGAAAACTCAAGCGGCTAAAGAGTTGGAATCTGAGATTAAGAAGGAACCTTATTCCGTAGAAGAGATCCCTGCTGTCAGCGAACAGGAGAAGCGAGAAATCAAAGTCTATACTTGTGACGAAGAAGGGGCATGGTTCAAAAAGTTGGAAGCCAGAAACTCGTTTGATTCAGTCCGGGAAAGTAGTGATGAAAGGGATCAGGTCTCAAGTCTCCCTTGCGTTGCTTTCGGCTTTACAAATCATATGGCCAACACTGAGGGCTCCGCCATGCCTCCAATGGAGTTGCAGTTAGGCTCCGGCAGCAGTGCTGTTGCTGTAGCTGGCGCGGGGTTGCCAGAATCCTTAGGCATAGGGATGGGCATGCCTCTGGGATTGGATTTGGAGCAAGGGTTCCTCGGTCAAGATGGTAGCAGAGTACGGTACGCCAATGATGTTGTGGACGGCGACAGTGTTGCTAATCGCCATCTCCATCTTAATAATTCCAACAATACCACCGCCACTTCTTCCTCTTCTACTTCTGGTATCTCTGGAATCAGTGCACAGGACACCGGGCTTGTTTTCGACTTCTGGACCGTTGCATCTTCGGCCGACGACGGTGCCATCCCCGCCACCTGCTCCCTCCCAACTCCGCCATCGGCAGGTAATCCTTCAATTGATGAAGTGACCATATTGCCGTCAACTCCCTGGAATCTTTCTTTATCTCGAGTTATCTCAGACGTCCGTGGATTTAGTGTTATTCCTGAATTGACGTGGTGCGGGGTATTACAGATCCGCAGCAAGGCCTTAATCGTAAAACACATGAGTAGACTTGGGGGAGCAGGCGGCATGGCTCATCTTGTAGCGGATGTTCCTTTGTCTGCGAGTAAGAGCGTTGGCGGCGGATGGAATCAAGCAGCCTGGGAGAAGTGGTCAAACGATGGCACAGAACAAGTGGTTGCAAAACTGATGGAAAATGTGGGAGCGGCCATGCAAAAGCCAAAGGGAGCTTTGCTTGAATGTTCAAGGAGTCACTTGAAGCAAATTTTAGGGCAGATTATGAGAAGCAATCTTATTGGTCAGACATTTCCAATGAGCAGACTCCTAGTGTTCTCTGCCATCTCACACCATGAGAATTTAGACATGGCTAAATCATTAGCGTTATACAATGCAATGCTACATGATCATGTGCTACCTGATAAGCACACACTATGTCGACTACTGCATTCTACCAAATGCATGGCAGAAACCAAGCAAATCCATTGTCATGCTATTGTTACAGGTTTGTTCCTCCAAGGATATCTGCAAAATACCCTTATAAAAATTTACTTGGATAGCAGAAATTTGGAGATGGCACTTCAGCTGCTACATCATATGCCTGCTCCAGATTCTGTTTCATTCAATATCACTATTGTTGGTTTTGCCAAGCATGGGTTTGGTGCAAAAGCGCTACAGCTATTCCACAGAATGGAGAATTTGGGTTGTGTCAAGTCTGGGGAACTCAACCTTGCTCATGACTTTTTTTATCAAATGCCTTGCAGAGATCTTGTTTCGTGGAATTCATTGATTGCTGGATATGCTCAAAATGGCATTATTCAATGGTAG 1689 0.463 MEASRRGRQELLFIVLRLDIIISSEQVWIQEVMLPLGKTQAAKELESEIKKEPYSVEEIPAVSEQEKREIKVYTCDEEGAWFKKLEARNSFDSVRESSDERDQVSSLPCVAFGFTNHMANTEGSAMPPMELQLGSGSSAVAVAGAGLPESLGIGMGMPLGLDLEQGFLGQDGSRVRYANDVVDGDSVANRHLHLNNSNNTTATSSSSTSGISGISAQDTGLVFDFWTVASSADDGAIPATCSLPTPPSAGNPSIDEVTILPSTPWNLSLSRVISDVRGFSVIPELTWCGVLQIRSKALIVKHMSRLGGAGGMAHLVADVPLSASKSVGGGWNQAAWEKWSNDGTEQVVAKLMENVGAAMQKPKGALLECSRSHLKQILGQIMRSNLIGQTFPMSRLLVFSAISHHENLDMAKSLALYNAMLHDHVLPDKHTLCRLLHSTKCMAETKQIHCHAIVTGLFLQGYLQNTLIKIYLDSRNLEMALQLLHHMPAPDSVSFNITIVGFAKHGFGAKALQLFHRMENLGCVKSGELNLAHDFFYQMPCRDLVSWNSLIAGYAQNGIIQW 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0087 562 Gene3D Tetratricopeptide repeat domain 401 522 IPR011990 GO:0005515
Lele05g0087 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Lele05g0087 562 Pfam PPR repeat 493 523 IPR002885 -
Lele05g0087 562 Pfam PPR repeat 545 558 IPR002885 -
Lele05g0087 562 Pfam PPR repeat 465 487 IPR002885 -
Lele05g0087 562 Gene3D Tetratricopeptide repeat domain 523 561 IPR011990 GO:0005515
Lele05g0087 562 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 406 522 - -
Lele05g0087 562 TIGRFAM PPR: pentatricopeptide repeat domain 493 524 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0087 Lele-ChrLele05 494783 503523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0087 285 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 56.790 6.09e-17 79.0