Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0085 ATGGCCGAAGAAGCCAAGGCCAAAGGTAATGCCGCTTTCTCTTCCTGTGATTTCGACTCCGCCATCCGTCACTTTTCCGACGCCATTTCTCTCTCCCCCAATAACCATGTCCTCTACTCCAATCGATCGGCCGCTTATGCCTCCCTTCACAAATACTCTGAAGCGTTAACCGATGCCAAGAAGACCGTTGAGCTCAAGCCCGATTGGTCCAAGGGCTACAGCCGTCTCGGCGTCGCTCATCTTGGACTCGGTCAACATGACGACGCTGTTGATGCTTACAAGAAGGGCCTCGAAATCGACCCCAACAATGAACCGATTAAATCCGGTTTGGCTGATGCCCGGGCCGCGGCTTCTAGGTCCCGTTCGGCGCCTCCCATGGGTAATCCTTTCGGAGACGCTTTCTCTGGACCCGAGATGTGGGCGAGGCTCACTGCTGATCCCATCACTAGAGCATATCTGCAGCAACCTGATTTCGTGAAGATGATGCAGGACATTCAGAAAAATCCCAACAATCTGAACTTGTATATGAAAGACCAAAGAATCATGCAAGCCCTCGGGGTTTTGCTCAACCTCAAGATTCGCACCCCGAACGAGGACACTGATATGCCCGAATCTTCCCCTTGGCATCCGCCAGCAGAGAGGAAGAGAGCTGCTGAAGCTGAACCGGCGAAGGAAGAGAAGCTGCCCGAGCCCCAGCCTGAGGCCATGGAATTGACGGAGGATGAGAAGGAAGCGAAGGACAGGAAAGGTCAAGCTCAGAGGGAAAAGGAAGCAGGCAATGCGGCTTACAAAAAGAAGGATTTTGATACGGCAATCCAGCATTACTCCAAGGCTATGGAATTGGTTGATGAGGATATATCATATCTCACAAACCGTGCTGCTGTTTACTTGGAAATGGGAAAGATCGAAGAATGCATAAAAGATTGTGACAAGGCTGTAGAAAGGGGAAGAGAACTGAGATCAGACTTTAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCCTGGCAAAAATGGCAAAATGCTCAAAGGATTATGAACCTGCCATTGAGACTTTCCAAAAGGCACTAACAGAGCATCGCAACCCTGACACCTTGAAGAAATTGAATGATGCTGAAAAGGCTAAGAAAGGACTTGAACAACAAGAATACTTTGATCCAAAATTGGCTGATGAGGAGCGTGAAAAAGGTAATGATTTCTTTAAGCAACAAAATTATCCTGAAGCTGTGAAGCATTACACCGAGTCTTTAAGAAGGAACCCTAAGGATCCTAGGACATGCAGTAACAGAGCTGCATGCTACACAAAACTTGGGGCAATGCCTGAGGGTTTGAAGGATGCAGACAAATGCATTGAGCTGGATCCAACTTTTGTAAAGGGTTATACTAGAAAAGGTGCTATACAGTTTTTCATGAAGGAATATGACAAAGCTTTGGAAACTTATCAGGAGGGGTTGAAACATGATTCAAACAACCAGGAGTTACTTGATGGCATAAGAAGATGTGTAGAACAAATTAATAAGGCCAGCCGTGGAGATATAAGTCCTGAGGAGTTGAAGGAGAGACAGGCCAAGGCAATGCAAGACCCTGAGATACAGAACATCCTCCAGGACCCTATTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGGCTGCACAGGACCATACGAAGAATCCGATGGTGATGAACAAGATCCAGAAGTTGGTCAGTGCTGGAATTGTCCAGATTAGATAA 1743 0.471 MAEEAKAKGNAAFSSCDFDSAIRHFSDAISLSPNNHVLYSNRSAAYASLHKYSEALTDAKKTVELKPDWSKGYSRLGVAHLGLGQHDDAVDAYKKGLEIDPNNEPIKSGLADARAAASRSRSAPPMGNPFGDAFSGPEMWARLTADPITRAYLQQPDFVKMMQDIQKNPNNLNLYMKDQRIMQALGVLLNLKIRTPNEDTDMPESSPWHPPAERKRAAEAEPAKEEKLPEPQPEAMELTEDEKEAKDRKGQAQREKEAGNAAYKKKDFDTAIQHYSKAMELVDEDISYLTNRAAVYLEMGKIEECIKDCDKAVERGRELRSDFKMIARALTRKGTALAKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNDAEKAKKGLEQQEYFDPKLADEEREKGNDFFKQQNYPEAVKHYTESLRRNPKDPRTCSNRAACYTKLGAMPEGLKDADKCIELDPTFVKGYTRKGAIQFFMKEYDKALETYQEGLKHDSNNQELLDGIRRCVEQINKASRGDISPEELKERQAKAMQDPEIQNILQDPIMRQVLVDFQENPKAAQDHTKNPMVMNKIQKLVSAGIVQIR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Lele05g0085 580 Pfam Tetratricopeptide repeat 288 314 IPR019734 GO:0005515
Lele05g0085 580 Gene3D Tetratricopeptide repeat domain 249 385 IPR011990 GO:0005515
Lele05g0085 580 FunFam Stress-induced phosphoprotein 1 249 383 - -
Lele05g0085 580 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lele05g0085 580 FunFam Stress-induced phosphoprotein 1 1 116 - -
Lele05g0085 580 SMART tpr_5 70 103 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 391 424 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 2 35 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 252 285 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 286 319 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 327 364 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 36 69 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 425 458 IPR019734 GO:0005515
Lele05g0085 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Lele05g0085 580 SUPERFAMILY TPR-like 251 378 IPR011990 GO:0005515
Lele05g0085 580 MobiDBLite consensus disorder prediction 196 262 - -
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lele05g0085 580 MobiDBLite consensus disorder prediction 208 262 - -
Lele05g0085 580 SUPERFAMILY TPR-like 1 113 IPR011990 GO:0005515
Lele05g0085 580 Coils Coil 363 383 - -
Lele05g0085 580 FunFam hsp70-Hsp90 organizing protein 3-like 390 504 - -
Lele05g0085 580 PANTHER TPR REPEAT CONTAINING PROTEIN 2 552 IPR045248 -
Lele05g0085 580 Coils Coil 235 255 - -
Lele05g0085 580 Gene3D - 127 193 - -
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515
Lele05g0085 580 SMART CBM 136 175 IPR006636 -
Lele05g0085 580 SMART CBM 529 568 IPR006636 -
Lele05g0085 580 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 512 580 - -
Lele05g0085 580 Pfam Tetratricopeptide repeat 460 492 IPR001440 GO:0005515
Lele05g0085 580 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lele05g0085 580 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
Lele05g0085 580 SUPERFAMILY TPR-like 390 503 IPR011990 GO:0005515
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lele05g0085 580 Gene3D - 510 580 - -
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Lele05g0085 580 Pfam STI1 domain 521 572 IPR041243 -
Lele05g0085 580 Pfam STI1 domain 137 190 IPR041243 -
Lele05g0085 580 Pfam Tetratricopeptide repeat 397 445 - -
Lele05g0085 580 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lele05g0085 580 Gene3D Tetratricopeptide repeat domain 389 504 IPR011990 GO:0005515
Lele05g0085 580 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0085 Lele-ChrLele05 489469 492217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0085 390 486 U-box Gene Family AT3G07370 28.866 1.61e-06 48.1