Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0078 ATGCAAATAAACGAGGAGCACTGCATTTTGCGGCTCGCGAAGGGAAGACTGAGAGATGACGATGGTGAGACTGCTCTTATTCATGCTGCTCGTCAGGGGCTTACTGCCACAGCTAAATATCTTATTGACCGTGGTGCCAATCCCGCTATTGCTAGCAACTTAGGAGCCACGGCGTTGCACCATTCTGCAGGAATAGGAGACATTGAGTTGCTCAAGTATTTGCTTTCCAGAGGTATTGATGCTGATTTAGAAAGTGACGCGGGAACACCATTGATTTGGGCTTCGGGTCATGACCAGAAAGATGCTGTCAGCGTTCTGTTAGAACATCACGCAAACCCTAATGCTGAAACTGATGATGGTGTTACTCCACTCCTTTCATCTGTGGCAGCTGGTTCTCTGACATGTATAGAGCTGTTAGTTCAGGCAGGTGCTAATGTAAATATTAGTGCTCCTGGAGCTGATCCTAATGTCGTTGATGAGGATGGAATGAAGGCAATACAAGTTGCGGGTTTAACGGGCAATCGCAAAGCTGTTGAGATATTGTTCCCCTTGACATCAAAAGTTGAAACTGTTCCTACTTGGAGTGTTGATGGCATACTAGAGTCTGTGCAATCAGAAAATAAAAATCAACAGGAGACAAGAAATGCTTCAGAAACTAGTTGCCGCAAGGATACTGCTTTGCCAGAGCAAAATCTTCCCGAGGTGACACCTGAAGCCAAGAAGAAAGCTGCGGAAGAAAATCAAGAGGGGACGAGGCCTTCAAAAGGGAAGACTAGTATATGGCCGTAG 789 0.4601 MQINEEHCILRLAKGRLRDDDGETALIHAARQGLTATAKYLIDRGANPAIASNLGATALHHSAGIGDIELLKYLLSRGIDADLESDAGTPLIWASGHDQKDAVSVLLEHHANPNAETDDGVTPLLSSVAAGSLTCIELLVQAGANVNISAPGADPNVVDEDGMKAIQVAGLTGNRKAVEILFPLTSKVETVPTWSVDGILESVQSENKNQQETRNASETSCRKDTALPEQNLPEVTPEAKKKAAEENQEGTRPSKGKTSIWP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0078 262 MobiDBLite consensus disorder prediction 205 226 - -
Lele05g0078 262 ProSiteProfiles Ankyrin repeat region circular profile. 21 47 - -
Lele05g0078 262 ProSiteProfiles Ankyrin repeat region circular profile. 119 148 - -
Lele05g0078 262 ProSiteProfiles Ankyrin repeat profile. 21 53 IPR002110 GO:0005515
Lele05g0078 262 Pfam Ankyrin repeat 21 49 IPR002110 GO:0005515
Lele05g0078 262 Gene3D - 5 227 IPR036770 -
Lele05g0078 262 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Lele05g0078 262 ProSiteProfiles Ankyrin repeat region circular profile. 54 86 - -
Lele05g0078 262 MobiDBLite consensus disorder prediction 205 262 - -
Lele05g0078 262 Pfam Ankyrin repeats (3 copies) 59 149 IPR002110 GO:0005515
Lele05g0078 262 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 19 250 - -
Lele05g0078 262 SUPERFAMILY Ankyrin repeat 16 182 IPR036770 -
Lele05g0078 262 ProSiteProfiles Ankyrin repeat profile. 119 151 IPR002110 GO:0005515
Lele05g0078 262 MobiDBLite consensus disorder prediction 235 252 - -
Lele05g0078 262 PRINTS Ankyrin repeat signature 55 70 IPR002110 GO:0005515
Lele05g0078 262 PRINTS Ankyrin repeat signature 135 149 IPR002110 GO:0005515
Lele05g0078 262 SMART ANK_2a 21 50 IPR002110 GO:0005515
Lele05g0078 262 SMART ANK_2a 54 83 IPR002110 GO:0005515
Lele05g0078 262 SMART ANK_2a 86 115 IPR002110 GO:0005515
Lele05g0078 262 SMART ANK_2a 119 148 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0078 Lele-ChrLele05 461347 464694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0078 10 182 Ion Channels AT4G32500 27.429 6.49e-08 51.6