Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0075 ATGGCCACCTCTGCCCAGCCTAAGCCGAAGAAATCTGCAGTCGTGAGGAAACCTAAATCCTCGCCCTCACACCCGCCTTTCGCTGAGATGATCACGGATGCGATCTTAAGTCTCAAAGAGAGGACCGGTTCCAGCCAGTATGCCATTACCAAGTTCATCGAGGAGAAGCACAAGCAGTTGCCTCCCACATTCAAGAAACTCTTGCTCAACAATCTGAAGAAGTCGGTGGCCGCTGGCAAACTCGTCAAGGTCAAGAACTCCTTCAAGCTTGCCCCCAAAAAACAGGCTCCTGCTGCTACGAAGCCCCCAAAACCCATCGTCAAGGCCGTACCTACGAAGCCCTCTGCTAAATCAAAAGTAGCGATTAAGTCTAAAGCCGTTCCCAAATCCAAATCCAAATCCGTTTCTGCAAGAAGTGCGAAAGCGACTTCGAGGCCGGCTAAGACGTCGGCCAGGACCTCGCTAGGGAAGAGGGTAGCTAAGGCGGCAAAGAGTGTGAAAAAGCCCAAGAGTGTGAAGTCGCCAGCCAAAAAAGAAACTATAAAGAAGGCCAAGAAGTAA 561 0.5098 MATSAQPKPKKSAVVRKPKSSPSHPPFAEMITDAILSLKERTGSSQYAITKFIEEKHKQLPPTFKKLLLNNLKKSVAAGKLVKVKNSFKLAPKKQAPAATKPPKPIVKAVPTKPSAKSKVAIKSKAVPKSKSKSVSARSAKATSRPAKTSARTSLGKRVAKAAKSVKKPKSVKSPAKKETIKKAKK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0075 186 PRINTS Histone H5 signature 117 131 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0075 186 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0075 186 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0075 186 PRINTS Histone H5 signature 174 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0075 186 PRINTS Histone H5 signature 152 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele05g0075 186 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0075 186 SUPERFAMILY "Winged helix" DNA-binding domain 20 104 IPR036390 -
Lele05g0075 186 MobiDBLite consensus disorder prediction 91 186 - -
Lele05g0075 186 CDD H15 21 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0075 186 Pfam linker histone H1 and H5 family 24 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0075 186 Gene3D - 18 104 IPR036388 -
Lele05g0075 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele05g0075 186 MobiDBLite consensus disorder prediction 1 27 - -
Lele05g0075 186 MobiDBLite consensus disorder prediction 129 151 - -
Lele05g0075 186 PANTHER HISTONE H1 7 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0075 Lele-ChrLele05 451316 451962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0075 30 90 Single Myb Histone (SMH) Gene Family AT1G49950 40.984 1.15e-07 48.9