Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0050 ATGACGAGGACTCCTTGCTGTGAGAAGATGGGATTGAAGAAGGGACCGTGGACTCCTGAAGAAGATCAGATTCTGATCTCTTATATTCAACGATATGGCCATGGAAACTGGCGGGCTCTTCCTAAACAGGCTGGTTTATTGAGGTGTGGAAAGAGTTGTAGGCTTCGGTGGATAAATTACTTGAGACCGGATATAAAACGAGGGAAATTCAGCAAGGAAGAAGAAGAAACCATCCTCAAGCTGCATCAAATTCTTGGGAATAAATGGTCTGCTATCGCGGCGAGATTACCAGGACGAACAGATAACGAAATAAAGAATTTTTGGCACACCCACCTGAAGAAGAGGCTCGAAAGATGCGAATTGCGTAATGTGAGTGCGTCCTCTTCAAGTAAAGGGGCGGTGATGCCGCCTGTGCCGCAGTTAGTAGTGACGGCGGAATCATCAATTGCTGCTAATTATCTTGGTTTCACTGGCAAGGTTCAGACGAGTAGCAACGAGGGTTTAGCGTCAAGGAAATATGCGACCGCTGTAGATTCAGGATTTCATGCTGCATCTGGGGAAACCCTAGGCGGCCATAGATCTAACAAGATCAGCGAAGAAATGGAATTTTGGTATGATCTATTCATGAAAGCAGGACAGCCGACGCAAGGGCATGCAAATCTTGGATAG 669 0.4634 MTRTPCCEKMGLKKGPWTPEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHQILGNKWSAIAARLPGRTDNEIKNFWHTHLKKRLERCELRNVSASSSSKGAVMPPVPQLVVTAESSIAANYLGFTGKVQTSSNEGLASRKYATAVDSGFHAASGETLGGHRSNKISEEMEFWYDLFMKAGQPTQGHANLG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0050 222 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele05g0050 222 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele05g0050 222 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele05g0050 222 FunFam MYB-related transcription factor 13 66 - -
Lele05g0050 222 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele05g0050 222 SMART sant 66 114 IPR001005 -
Lele05g0050 222 SMART sant 13 63 IPR001005 -
Lele05g0050 222 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lele05g0050 222 Gene3D - 69 116 - -
Lele05g0050 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele05g0050 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele05g0050 222 CDD SANT 16 61 IPR001005 -
Lele05g0050 222 Gene3D - 13 66 - -
Lele05g0050 222 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 155 - -
Lele05g0050 222 CDD SANT 69 112 IPR001005 -
Lele05g0050 222 FunFam MYB transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0050 Lele-ChrLele05 331033 332082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0050 1 208 MYB Transcription Factor Family AT2G31180 48.333 3.07e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele05g0050 Myb_DNA-binding 1.4e-15 CL0123