Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0028 ATGGCAAAGACTGGCGTCTTTGAAAACTACTCAACTTTGCTTCCCCATGCAAAAGCTTTGGATTTGAAGCACCAACTGCGGGGGCTCGTCAATATTATCCTGGACGCCGATGATTTCCCGCTGGCCGCACTTGACGAAGCTATTACAACTCTTTCTTCTCTCAAGGATTTGAAATGTAAATCCACCGGCTCCTTCCCTCACAAATTCCATCATTTGTCTCTTCCCCCGGAATTTCGATGCCCCATATCTCTAGAGCTAATGAGTGATCCGGTTATCCTGGCCACCGGACAGACTTATGATCGGCCATTTATCCAAAGATGGTTAAATGAAGGCCACAAGACATGCCCTCAAACTCAGCAAGTCCTTTCTCACTCCATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCAAGGAGAAAGGAGTTGAGTTGCCTAAGCCTGTTCGGGACATTGGTGAAGAAGTAATAGCTGATGCAGATAGAAGCCATTTGAATTCATTGCTCAAGAAGTTGTCAATGTCTATTTCGGATCAGAAAGCAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATGTCGAATCCTTTTTAATGAGTCCAGTGATGTGATATTACAGTTGCTCAGTCCATTGTCACCCGGTACGGCTTATATCCCTCCTGACCTTCACGAGGACTTGATCACCACTGTTCTAAATCTCTCAATTCATGATGATAATAAGAAAATGTTTGCTGAGAATCCCACAGTCATCCCTCTTCTGATTGAGTCCTTAAAATTTGGAACCATCCAAACAAGAAGTAATGCTGCGGCAGCTATTTTCACATTATCTGCACTTGATTCCAACAAGAGCGTCATTGGAAATTCTGGGGCCATCAAACATTTAATTGAGCTTTTGGAGGAGGGACATCCATTGGCCATGAAAGATGCTGCCTCTGCGATATTCAACCTATGTTTGGTGCACGAAAATAGAGGAAGGACTGTTCAAGAAGGAGCTGTCCCAGTTATCCTGAACAAGATCATGGACCGTGCTCTAGTCGACGAGTTGTTGGCTATTCTGGCACTCCTATCTAGCCATCCAAAGGCTATCGAAGAAATGAGCGATATTGGTGCTGTCCCCTTGTTGCTCAGTATTATACGGGAGAGCACATCCGAAAGCTGCAAGGAAAATTGTGTTGCAATCCTACACACGATCTGCTTTTCTGATAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAAAGCCAAGGGCACACTTTCCGAACTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAAAGGGATTCTTCAGAGGCTCAATAGATCTGCCACCTTAACACACACGGCTTAG 1371 0.4478 MAKTGVFENYSTLLPHAKALDLKHQLRGLVNIILDADDFPLAALDEAITTLSSLKDLKCKSTGSFPHKFHHLSLPPEFRCPISLELMSDPVILATGQTYDRPFIQRWLNEGHKTCPQTQQVLSHSILTPNHLVRDMISHWCKEKGVELPKPVRDIGEEVIADADRSHLNSLLKKLSMSISDQKAAAKELRLLTKRMPSCRILFNESSDVILQLLSPLSPGTAYIPPDLHEDLITTVLNLSIHDDNKKMFAENPTVIPLLIESLKFGTIQTRSNAAAAIFTLSALDSNKSVIGNSGAIKHLIELLEEGHPLAMKDAASAIFNLCLVHENRGRTVQEGAVPVILNKIMDRALVDELLAILALLSSHPKAIEEMSDIGAVPLLLSIIRESTSESCKENCVAILHTICFSDRTKWKEIREEEKAKGTLSELAQCGTSRAKRKAKGILQRLNRSATLTHTA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0028 456 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Lele05g0028 456 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Lele05g0028 456 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Lele05g0028 456 Gene3D - 158 453 IPR011989 -
Lele05g0028 456 SUPERFAMILY RING/U-box 69 151 - -
Lele05g0028 456 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Lele05g0028 456 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Lele05g0028 456 FunFam RING-type E3 ubiquitin transferase 351 452 - -
Lele05g0028 456 PANTHER U BOX DOMAIN-CONTAINING 41 446 - -
Lele05g0028 456 SMART arm_5 242 283 IPR000225 GO:0005515
Lele05g0028 456 SMART arm_5 284 324 IPR000225 GO:0005515
Lele05g0028 456 SMART arm_5 364 405 IPR000225 GO:0005515
Lele05g0028 456 Pfam U-box domain 75 144 IPR003613 GO:0004842|GO:0016567
Lele05g0028 456 CDD RING-Ubox_PUB 78 120 IPR045210 -
Lele05g0028 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0028 Lele-ChrLele05 213001 215088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0028 136 456 U-box Gene Family AT3G07360 58.485 2.31e-122 357