Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g2004 ATGGGGACACGACCTCAGCAACCATGTCGAGAGGAAGAGGAAGATGAGCTGCTAGGTCGTGGAACAACGCTTTCTGGTCAATCTATTTCCACAAGTAAAAGTATAGGGTCTCCATCCAGTCGGAGTGAGCAGACAATGGCTACACCAGCCAGTGATAACACTTTTCTAAGATTAAATCATCTTGACATCCATTGTGATGATACTGGATCTCAGGGAGCAGTTGCTAGTGGCAAGAAGAAAAAGAGAGGCCAGCGTGCTGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGCATGAAAGGCTATGGGTTTCAACGTTTCGATCTTGACCAAGATCTTGCAACTAAGATGAAAGGCACAAGGGCCTTTTTGGCATGGATGCAGGATTGCTTCAATGCAATAGGGGCAATAGAATTGTTTTGGGGTGAGTTTGGAGGAAGATTGACAATCAGGAAATCTTTTGGCATGTTACCTATCCTGCCAGATGAACTTGTGGCTGAATTTGCTGACCCAGGCAGTAGTATTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGACATAATTTCGAAGGATAAAAAGGAAATTCAATGGAAGGGTCTACCTCGTACAAGTCTGAATGATATTGAAGAATTGAAGCTTAGGAATCGAATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATGTCTGTTTGCTGACTCCTTGTCTTATTACATCAAGTACATAGGTCTTCAGAATCTCATACAGCGAAATGAGCAATTATATGGCTCTGGAAATGCTCCCAGTGGAGGTGTAGCCTTACCTTTTATTCTTGTACAGACTCGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATATGACTCAGAATCTCGGGGACGGTGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCGCAAGTCACTCCTTCAGCATCAAACCAACCGGTTAGAATTCCGACCTCGCCGCCTCTCCCTGGAATATTGAAGGCAAGAGTTAAGCATGAGCATTGA 1185 0.4414 MGTRPQQPCREEEEDELLGRGTTLSGQSISTSKSIGSPSSRSEQTMATPASDNTFLRLNHLDIHCDDTGSQGAVASGKKKKRGQRAVGGDKSGRGLRQFSMKGYGFQRFDLDQDLATKMKGTRAFLAWMQDCFNAIGAIELFWGEFGGRLTIRKSFGMLPILPDELVAEFADPGSSISTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKLRNRIEKKAAYLQELEEQCLFADSLSYYIKYIGLQNLIQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTQNLGDGGEGSSMSGLYQAQVTPSASNQPVRIPTSPPLPGILKARVKHEH 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g2004 394 MobiDBLite consensus disorder prediction 364 384 - -
Lele04g2004 394 SUPERFAMILY "Winged helix" DNA-binding domain 162 219 IPR036390 -
Lele04g2004 394 Pfam E2F/DP family winged-helix DNA-binding domain 189 218 IPR003316 GO:0005667|GO:0006355
Lele04g2004 394 Gene3D Transcription factor DP 224 350 IPR038168 -
Lele04g2004 394 CDD DP_DD 223 333 IPR014889 -
Lele04g2004 394 MobiDBLite consensus disorder prediction 69 93 - -
Lele04g2004 394 SUPERFAMILY E2F-DP heterodimerization region 228 345 IPR037241 -
Lele04g2004 394 MobiDBLite consensus disorder prediction 1 51 - -
Lele04g2004 394 PANTHER TRANSCRIPTION FACTOR DP 23 366 IPR015648 GO:0005667|GO:0051726
Lele04g2004 394 SMART E2F_TDP_2 91 218 IPR003316 GO:0005667|GO:0006355
Lele04g2004 394 Coils Coil 229 249 - -
Lele04g2004 394 Pfam Transcription factor DP 228 347 IPR014889 -
Lele04g2004 394 Gene3D - 159 223 IPR036388 -
Lele04g2004 394 SMART DP_2 225 392 IPR014889 -
Lele04g2004 394 FunFam Transcription factor-like protein DPB 224 355 - -
Lele04g2004 394 PIRSF Txn_factor_DP 5 120 IPR015648 GO:0005667|GO:0051726
Lele04g2004 394 PIRSF Txn_factor_DP 162 394 IPR015648 GO:0005667|GO:0051726
Lele04g2004 394 MobiDBLite consensus disorder prediction 21 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g2004 Lele-ChrLele04 24696361 24703150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g2004 162 343 E2F-DP Transcription Factor Family AT5G02470 50.532 8.37e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele04g2004 DP 6.6e-34 No_clan