Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1988 ATGAAACCCAAAAGCTATAATGCTTTAGTACTACTAGAGTTCTTCTTCCTTGTGTCGTTAGAAACAACTTTTCTCACCAACAACGTAGTAGAATCCAAGTGTCTTCAAGGATGTCCTTTAGCTTTAGCATCCTACTACCCTCAAAACACTTCTATAGGTATTATAATTCAGCTTCTGAGATCAGATCTTGCGTCAGATATTGCAGATATTTCCAGCTACAACGAAGGAAAAGTATACAATGGTATCTACATTCAATCCTTCACGAGAATCAACGTTCCTTTCTCTTGTGAATGCATCAATAATGGAGATTTTCTAGGTCATTTGTTCGAGTACACAATAATAGAAGGAGACACTTATGATTTCATTGCTACAAGACAATATGCTTCGTTGACCACAGTGGATTTACTGAGAAGATTCAATAACTACAGTGATCCAAATAAGCTTCCTTCCAAAGGGAAACTTATAGTCCCAGTAAATTGTTCTTGTGGGGAAAGACAGATTTCTAAGAATTATGGGTTGTTTATTACTTATCCACTTAGGGTTCAAGATAGCTTGGAATCTATTGTGAACCAGACCGGTATCGACGCAACGGTGATTCAGAATTACAATCCTGGTGTGAATTTCAGCCAGCAGAGTGGAGTGGTTTTTATTCCTGGAAGAGATCAGAATGGAAAGTACGTGCCCCTGGACCCTAGGCGAAGAGCTTCGGGATCTAGTGACCCTGCTAGTAGAACTGGTCTTAGAGGCATCATGGTGGGAAAATCCATGGAGTTCTCATATCAAGAAATAGCCAAAGCTACCAACAACTTCAGCTCTGATAACAAGATTGGTCAAGGAGGTTTTGGAGCAGTATATTATGCCGAGCTTAGAGGCGAGAAAACAGCAATAAAGAAGATGGGTATAGAAGCATCGCAAGAGTTTCTTGCTGAGTTGAAGGTTTTAACACATGTTCATCATTTGAATCTGGTGCGGTTGATCGGATATTGTGTGGAGGGATCGCTTTTCCTTGTTTATGAATATATCAACAATGGAAATTTAAGCTATCATTTGCGTTCCTCATCAGGGTTAGATCCATTGCCATGGGCTACAAGGGTGCAAATTGCCCTGGATTCAGCAAGAGGACTTGAATATATTCATGAACATACAGTGCCCGTTTATATCCATCGTGACGTTAAGTCTTTGAACATATTAATCGACAAAAACTTCCATGCAAAGGTGGCAGATTTTGGGTTAAGCAAACTCATAGAAGTTGCAAATGCGTCGCTTAACACACGTCTTGTGGGAACATTCGGATATATGTCTCCAGAGTATGCTCAATTCGGTATAACATCTCCAAAAATAGATGTATATGCTTTTGGAGTGGTACTTTATGAACTCATTTCTGCTAAGAATGCTGTCCTCAAGACAAATGAATTTGTTCCTGAATCAAAAGGCCTTGTAGCTCTGTTTGAGAAATGTCTTCGTAGGCCTGATGCTGTTGAAAATCTCCGCAACCTTGTGGATCCTAGACTTGGAGAGAACAACTACCCCATTGAATCAGCTTATAAGATGGCCCAACTTGCTAGAGCTTGTACACAAGATGATCCACAGCTACGTCCCACTATGAGATCTATTGTGGTAGCTCTTATGACACTTTCATCTTATCCTGAGGATCATGATTGTGACGTTGTTGGCTCTGCCTTTTCTGATAATCAAACTATCATAAATCTACTCTCTGGAAGATAA 1725 0.4 MKPKSYNALVLLEFFFLVSLETTFLTNNVVESKCLQGCPLALASYYPQNTSIGIIIQLLRSDLASDIADISSYNEGKVYNGIYIQSFTRINVPFSCECINNGDFLGHLFEYTIIEGDTYDFIATRQYASLTTVDLLRRFNNYSDPNKLPSKGKLIVPVNCSCGERQISKNYGLFITYPLRVQDSLESIVNQTGIDATVIQNYNPGVNFSQQSGVVFIPGRDQNGKYVPLDPRRRASGSSDPASRTGLRGIMVGKSMEFSYQEIAKATNNFSSDNKIGQGGFGAVYYAELRGEKTAIKKMGIEASQEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSYHLRSSSGLDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDVKSLNILIDKNFHAKVADFGLSKLIEVANASLNTRLVGTFGYMSPEYAQFGITSPKIDVYAFGVVLYELISAKNAVLKTNEFVPESKGLVALFEKCLRRPDAVENLRNLVDPRLGENNYPIESAYKMAQLARACTQDDPQLRPTMRSIVVALMTLSSYPEDHDCDVVGSAFSDNQTIINLLSGR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1988 574 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Lele04g1988 574 Pfam Protein tyrosine and serine/threonine kinase 273 541 IPR001245 GO:0004672|GO:0006468
Lele04g1988 574 ProSiteProfiles Protein kinase domain profile. 270 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1988 574 FunFam PTI1-like tyrosine-protein kinase 3 341 556 - -
Lele04g1988 574 Pfam LysM domain 111 157 IPR018392 -
Lele04g1988 574 SMART serkin_6 270 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1988 574 Gene3D LysM domain 109 167 IPR036779 -
Lele04g1988 574 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 238 555 IPR044812 GO:0019199|GO:0045087
Lele04g1988 574 Gene3D Transferase(Phosphotransferase) domain 1 341 560 - -
Lele04g1988 574 FunFam LysM receptor kinase 2 249 340 - -
Lele04g1988 574 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Lele04g1988 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Lele04g1988 574 SUPERFAMILY Protein kinase-like (PK-like) 249 543 IPR011009 -
Lele04g1988 574 CDD LysM 111 148 IPR018392 -
Lele04g1988 574 Gene3D Phosphorylase Kinase; domain 1 244 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1988 Lele-ChrLele04 24527216 24534752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1988 9 574 Receptor kinase-like Gene Family AT3G21630 50.635 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele04g1988 PK_Tyr_Ser-Thr 7.7e-44 CL0016