Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1962 ATGGCGAAAGAAGGTGCTCTTCTCGTGAGTTCGAAAGCGGAGTTGAAACGGAAGGAGAAGCAACAGAAGAAGGCCAAGTCTGGCGGCTTTGAGTCCTTGGGTCTTAGCCCCAACGTGTACAGAGGAATCAAGCGCAAAGGTTATAAGGTGCCCACTCCAATTCAGAGGAAGACGATGCCAATCATTCTTTCTGGCGCTGATGTTGTTGCCATGGCTCGTACTGGGTCTGGTAAAACCGCTGCGTTTCTCGTCCCTATGATTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACAAGAGACTTGGCGCTTCAGACTTTGAAGTTCACCAAAGAGCTTGGCCACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGTGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAAAATCCTGACATTATAATTGCAACGCCTGGTAGGCTTATGCACCATTTGTCTGAAATTGATGACATGTCTCTGCGAACTGTGGAATATGTTGTTTTTGATGAGGCAGATTGTTTATTTGGCATGGGTTTTGCTCAGCAATTGCATCAAATTCTTGCGCAGCTAGGTGAGAACCGTCAAACCTTGCTTTTCAGTGCTACATTACCTAGTGCCCTTGCTGAATTTGCAAAGGCTGGCCTGCGTGACCCCCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGCCCTGACCTGAAGGTTGCCTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTATTGTATTTGATTAGGGAGAAAATTAATTCTGATCAGCAGACACTAATATTTGTATCCACAAAACATCACGTGGAATTTCTGAACACATTGTTTAGGGAAGATGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGAAAGACAATGTTGTTGATCGTGACAGATGTTGCTGCCCGGGGCATAGATATTCCATTACTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGAGCGGGTCGCACTGGTACTGCCTTTTCTTTTGTGACTTCGGAGGATATGCCATACCTTTTGGATCTTCATTTGTTCCTTTCAAGGCCAATCAGAGCTGCTCCAACTGAAGAAGAGGTTCTGCAGGATATGAATGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGTTTCCCTCAAAATGTCTTAGACCTTGTTTCAGACAGAGTTCGTGAAACCATTGACGCTTCTGCTGAACTACAATCATTGCAGAAGACCTGTCAAAATGCATTTCGTTTATATTCGAAGACAAAACCCTTACCTTCAAAGGAGTCTATTAGAAGAGTAAAAGATTTACCACGTGAGGGGTTGCATCCAATTTTCAAGAATGTATTGGAAACAGGGGAATTAATGGCACTTGCTTTTTCAGGGCACTTGAAAAAGTTTAGGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTACAGGGACCTGCCGGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCCATTCATGAGAATATTATAAATTTAGTCCACGAGCAGCGCTCTAAGAATAACACAAAAGAGGGGGAAATTGAATTGGATATCACTCCTTCTGAGGAGAAGGGCAAAAAAGCAGTGTCTGGTTCTAAGAGAAAGCCGCAAAGTTTCAAGGATGAGGAATACTACATAAGTTCGATACCCCAAAATCATCATATGGAAGCAGGTCTTTCAGTCAGGGCTAAAGAAGACTTTTCTTCAAACAGATTGGAATCAGCTGTTCTCGATCTAGTTGCAGATGACAGTGCTGGAATTCAGAAACAAAAGTCAGTATATCATTGGGATAAGAAAAGTAAAAAGTACATCAAGCTAAACAATGGTGAACGTGTTGCTGCTAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCAACAAAACTGGTATATATAAGAAGTGGAAAGAACGTTCACACAATAAGATAGCTCTTAAGTGGATGGATAATGAAGGTGATTCTTATGGATCCACAAGTTCGGCAGGGCATTCTCGAGGTGGACCCCGGAAATTTAAGGGCGGCAAGAAGCAGCATTCAGTGCCAAATGCTCATGTGCGTTCAGAGATCAAAGACTTAGATCAAATTCGAAAGGAGAGGCAGCAGAAAGCAAACAGACTTTCATATCTGAAGAGCCAGTCTGCTAAAAAGGGTAAAAATTTTGGTAAAAATGGGAAGAAAGGAAAGGGTGGTGGTGGTGGACATGGTGGAAAGAAAGGAAAGGGAAGGCGAGGCCTTCGTCTGGTTGGACGGGGGGGATTCGTTTTCCTGGTTCGGCGTTTCGCAGTCCACACTTGGTCGAGCTCGCCGTCGGAAGCTGTGCAACGTGTTCAGCCCTGCGTGGTTTTTCTCCTGCAAGTATTGAAGAAGAGCAGATTAACACAAGAAAATGAACAAGGATAA 2574 0.434 MAKEGALLVSSKAELKRKEKQQKKAKSGGFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLVPMIQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEIDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKVAFFTLRQEEKYAALLYLIREKINSDQQTLIFVSTKHHVEFLNTLFREDGIEPSVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSRPIRAAPTEEEVLQDMNGAFSKIDQAIAKGETVYGRFPQNVLDLVSDRVRETIDASAELQSLQKTCQNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSGHLKKFRPKQTVLEAEGEAAKSKHLQGPAGQWVDVMKKKRAIHENIINLVHEQRSKNNTKEGEIELDITPSEEKGKKAVSGSKRKPQSFKDEEYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIKTEGGAKVKANKTGIYKKWKERSHNKIALKWMDNEGDSYGSTSSAGHSRGGPRKFKGGKKQHSVPNAHVRSEIKDLDQIRKERQQKANRLSYLKSQSAKKGKNFGKNGKKGKGGGGGHGGKKGKGRRGLRLVGRGGFVFLVRRFAVHTWSSSPSEAVQRVQPCVVFLLQVLKKSRLTQENEQG 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1962 857 Coils Coil 750 770 - -
Lele04g1962 857 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Lele04g1962 857 MobiDBLite consensus disorder prediction 739 762 - -
Lele04g1962 857 MobiDBLite consensus disorder prediction 1 30 - -
Lele04g1962 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 384 IPR027417 -
Lele04g1962 857 MobiDBLite consensus disorder prediction 712 802 - -
Lele04g1962 857 SMART ultradead3 47 247 IPR014001 -
Lele04g1962 857 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 699 - -
Lele04g1962 857 SMART helicmild6 285 366 IPR001650 -
Lele04g1962 857 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Lele04g1962 857 CDD DEADc_DDX54 28 233 - -
Lele04g1962 857 Gene3D - 246 475 IPR027417 -
Lele04g1962 857 Pfam DBP10CT (NUC160) domain 634 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lele04g1962 857 CDD SF2_C_DEAD 254 375 - -
Lele04g1962 857 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 405 IPR001650 -
Lele04g1962 857 Gene3D - 3 235 IPR027417 -
Lele04g1962 857 MobiDBLite consensus disorder prediction 10 26 - -
Lele04g1962 857 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Lele04g1962 857 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Lele04g1962 857 SMART DBP10CT_2 634 696 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1962 Lele-ChrLele04 24173280 24180781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1962 30 399 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 8.35e-59 204