Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1935 ATGCGGGGGCCGAAGGCCACCCCTTCCAAGTTTCAACCTCCTCGAGGTTCGTTGAAGCAAAGTAGGTTAAGAACCTACGAAGTAGGGATCTTTCAACTAAGTTCAGATTTGAGCATGGCTCATAGGTTGCTGAGGGATCATGAAGCAGATGGCTGGGAACGATCTGACTTTCCTATTATCTGCGAATCATGCCTCGGGGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAAATCTGCCAAACATGTAGTAAATTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTATGGGTTACCAGTTCAAGTCCGAGATACGGCTCTCAGCATCAGTTCCCATGATGCTATTCCAAAGAGCGATGTTAATCGGGAGTATTTTGCTGAAGAACATGATCGCAAGACTCGTGCTGGCTTGGATTATGAATCCTCGTATGGGAAAGTACACCCCAATGATACTATTTTGAAGCTTCAGAGGACAACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATGAGGGGTGAGTGTACCAGAGGAGCTGAATGTCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAACGATCCTGTGGCATTAAAATTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGATCCTCCAGAGGATGAGACCATTAGAACTCTTTATGTGGGTGGGCTTGATGCTAGGGTCAGCGAGCAGGATCTCCGTGATCACTTTTACGCCCATGGTGAAATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGTGCTTTCGTAACCTACACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTCATCAGGGGCCTAAGGTTGAAGCTGATGTGGGGTAGACCTCAGACGTCAAAACCTGACTCTGAAACTTCTGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCCGTCATATCACAGCAGCAGAGCCAGGATCAAACCCAGGGAGTGCATTACTATAACATTCCACCTCCTCCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGCGCTGTTATTCCGGCCCAAGACGGTGGTCCTCCTGGTGGCACTACTGGGACCGGAGAGAACAACAAACCCAATTTGGAGAAGCAGCAAATCCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAACATCATCATCATCAGTATTATCCCCCAAACCCGTACGGTTATATGCCACCTGTACCCGGTTATCAACAATACCCACCACCATACAACCATGGGATGGCTTCATCTCAACCACTGGCTGTAAACCAGCCATATCGGCAATCCATGCAGCCGGGTTCGTCTGCTCCCTCAGGGTCCGCACCAACAGGATCAGGACCAGCTGGTGGTTCTGCACCTGCGGAAGCCGGAACATCAACCTAG 1587 0.4827 MRGPKATPSKFQPPRGSLKQSRLRTYEVGIFQLSSDLSMAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVHPNDTILKLQRTTPYYKRNRAHICSFYMRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLDPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQTSKPDSETSDQARQQASVAHSGLLPRAVISQQQSQDQTQGVHYYNIPPPPQQDRSYYPSMDPQRMGAVIPAQDGGPPGGTTGTGENNKPNLEKQQIQHFAHPMMPPPPGQHHHHQYYPPNPYGYMPPVPGYQQYPPPYNHGMASSQPLAVNQPYRQSMQPGSSAPSGSAPTGSGPAGGSAPAEAGTST 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1935 528 FunFam Zinc finger CCCH domain-containing protein 40 251 347 - -
Lele04g1935 528 FunFam Zinc finger CCCH domain-containing protein 4 187 246 - -
Lele04g1935 528 SUPERFAMILY RNA-binding domain, RBD 258 345 IPR035979 GO:0003676
Lele04g1935 528 MobiDBLite consensus disorder prediction 366 385 - -
Lele04g1935 528 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Lele04g1935 528 MobiDBLite consensus disorder prediction 475 528 - -
Lele04g1935 528 CDD RRM_RBM22 265 338 - -
Lele04g1935 528 Gene3D - 250 349 IPR012677 -
Lele04g1935 528 MobiDBLite consensus disorder prediction 341 358 - -
Lele04g1935 528 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Lele04g1935 528 Gene3D - 187 246 - -
Lele04g1935 528 MobiDBLite consensus disorder prediction 337 460 - -
Lele04g1935 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 325 IPR000504 GO:0003723
Lele04g1935 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 339 IPR000504 GO:0003723
Lele04g1935 528 MobiDBLite consensus disorder prediction 478 513 - -
Lele04g1935 528 SUPERFAMILY CCCH zinc finger 197 220 IPR036855 GO:0046872
Lele04g1935 528 MobiDBLite consensus disorder prediction 419 434 - -
Lele04g1935 528 Pfam Torus domain 172 232 IPR032297 -
Lele04g1935 528 MobiDBLite consensus disorder prediction 441 460 - -
Lele04g1935 528 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 39 416 IPR039171 GO:0003723
Lele04g1935 528 SMART rrm1_1 267 335 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1935 Lele-ChrLele04 23859554 23864022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1935 267 327 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 6.96e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1934 25 26998386 27006860 Lele04g1935 04 23859554 23864022 CCT
Lele26g1977 26 23181435 23193874 Lele04g1935 04 23859554 23864022 CCT
Lele27g0141 27 1108685 1119169 Lele04g1935 04 23859554 23864022 CCT
Lele28g1980 28 23009462 23021646 Lele04g1935 04 23859554 23864022 CCT
Lele01g1626 01 11331152 11336365 Lele04g1935 04 23859554 23864022 hybridization
Lele02g1985 02 23508916 23513102 Lele04g1935 04 23859554 23864022 hybridization