Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1907 ATGGGCAACTTCTGCGTGAAGCCAGTTGCTCATGTTAATTCCTCCAATCTTTCTGGAAGTTCAAAGTCAAGTAAGACACAACAGAAATACAATTCTTCAGGAAAAAAAGCTGCTTTGCAAAGTTCAGCATCAAATCCGGACAGACCCATTTCCAATAATCTCAAGTCCTTTAGCTTCAATGATCTAAAGGAAGCCACCAAGAACTTCCGTGAAGAAAATTTTATTGGAGAGGGAGGTTTTGGGCGCGTCTTCAAGGGATGGATTAACACTAGCACCTTTATGCCATCAAAACCAGGGAGTGGAGTGGTAGTGGCCATTAAGCAGCTCAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCTGAAGTCAATTATCTAGGGCAGCTTCACCACGAAAATCTGGTGAAACTTATTGGTTATTGTTCAGAGGATAGAAATAGGCTTCTAGTTTATGAGTTCATGCAAAAGGGAAGCTTGGAGAATCATTTATTTAGAAGCGTTCAACCCATATCTTGGGCAACCCGGATCAGTATTGCAGTTGGTATTGCAAGAGGATTAGCATTCTTGCATGGCTTGGATGCGAATGTTATCTATCGTGATTTAAAGGCTTCTAACATCCTACTTGATTCGGATTTCAATCCAAAGCTTTCGGATTTCGGTTTGGCCAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTCTTGGAACTCAAGGTTATGCTGCCCCCGAGTATGTAGCAACAGGTCACTTGACTCCGAGAAGTGATGTCTACAGCTTTGGTGTTGTCTTGCTAGAGTTGCTAACCGGGAGACGGGCATTAGAAGACGACAGACCTGGGTCTATAGAAGAAACCCTGGTGGACTGGGCAAAGCCATTCCTGACCGATAACCGGCGAGTTCTGAGGATCATGGATACAAGGCTAGGCGGGCAATACTCCAAGAAAGGAGCTCAATCAGCAGCTGCACTTGCATTGCAATGCTTGACCTCAGATCCTAGATACAGACCTCCAATGGCGGATGTTCTTGCTGCATTGGAAGCTCTCAGTTCCTCAAGTTCAATCCCAAGGACCCCAAAATCTCACAGTGAGAATGTTTCAAACAGACATTCTAGCCCTAGTCATCCACAAAAGCCAATCAGACATCAAAAGTCTGTCTGA 1170 0.4462 MGNFCVKPVAHVNSSNLSGSSKSSKTQQKYNSSGKKAALQSSASNPDRPISNNLKSFSFNDLKEATKNFREENFIGEGGFGRVFKGWINTSTFMPSKPGSGVVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSEDRNRLLVYEFMQKGSLENHLFRSVQPISWATRISIAVGIARGLAFLHGLDANVIYRDLKASNILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVLGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGSIEETLVDWAKPFLTDNRRVLRIMDTRLGGQYSKKGAQSAAALALQCLTSDPRYRPPMADVLAALEALSSSSSIPRTPKSHSENVSNRHSSPSHPQKPIRHQKSV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1907 389 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 363 - -
Lele04g1907 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lele04g1907 389 SMART serkin_6 69 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1907 389 CDD STKc_IRAK 75 345 - -
Lele04g1907 389 ProSiteProfiles Protein kinase domain profile. 69 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1907 389 SUPERFAMILY Protein kinase-like (PK-like) 52 371 IPR011009 -
Lele04g1907 389 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Lele04g1907 389 PANTHER OS01G0588500 PROTEIN-RELATED 29 352 - -
Lele04g1907 389 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Lele04g1907 389 FunFam Serine/threonine-protein kinase BIK1 36 154 - -
Lele04g1907 389 Gene3D Phosphorylase Kinase; domain 1 40 154 - -
Lele04g1907 389 MobiDBLite consensus disorder prediction 13 52 - -
Lele04g1907 389 MobiDBLite consensus disorder prediction 354 377 - -
Lele04g1907 389 MobiDBLite consensus disorder prediction 354 389 - -
Lele04g1907 389 Gene3D Transferase(Phosphotransferase) domain 1 155 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1907 Lele-ChrLele04 23461279 23465075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1907 13 355 Glycoside Hydrolase AT3G07070 48.000 1.94e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele04g1907 PK_Tyr_Ser-Thr 1.6e-47 CL0016