Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1896 ATGTCAAGTGGAGCAACACACTGGTGTTATGAGTGCAGGCGGGCAATCATACTTGAAGGCAGAGATTTCACATGCCCTTATTGTCATGAAGGCTTTGTGATAGAACTTGATGAGATGCAAAGAACGGGACATATGGAAGATTTTCATCAAGCACCCGACATTTTTGGTGCTATTCATGCTGTGATGGGGAGGAGATTCCCAGAAACAAGATTTCTAGATTCAGTTGATAATATCCTAAGGCAGAGAATGGCTGGACAAAACCCAAACTTTGATGTTAGAGGGCGATCTATATCTGCCATGGGTCCTGATCAGAGTTGGGGTTTTATTAGCTCTGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGAATCCCTAGAGGCGGTCCTAGGCGTGTCGATGTTAGCGACTACTTTATGGGCCCTGGACTGGAAGAACTTATTGAACAGCTCACCATGAATGATCGGCATGGTCCACCCCCAGCCTCGCGTTCTTCAATTGATGCAATGCCTACCATAAGAATCACACAGGCTCATCTTCGTTCTGACTCTCAATGCCCTGTTTGTCAAGATAAATTCGAACTTGGTTCTGAGGTGAGGGTGATGTCTTGTAGCCATATTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAACATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCATGGACAAGTTAGTCCTCACGCTAGTCGTAATTTGGGAGGAAGTAATGCAGAAAGCACTAACAATGATAGTGTGAGGGAGAGGGAGTCTAGCCAGCAGAACCAAGGAAGGAGAAATCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTTCTAGCTCAAACAGTAATAATCAATATGCTGAGACTAGAGGAAGCAACTCTTCAAACAGTCGTGACCAGAATAATGGAACAAACCAGAACCATAGCTGA 960 0.4458 MSSGATHWCYECRRAIILEGRDFTCPYCHEGFVIELDEMQRTGHMEDFHQAPDIFGAIHAVMGRRFPETRFLDSVDNILRQRMAGQNPNFDVRGRSISAMGPDQSWGFISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPPPASRSSIDAMPTIRITQAHLRSDSQCPVCQDKFELGSEVRVMSCSHIYHSDCIVPWLVQHNSCPVCRVELPPHGQVSPHASRNLGGSNAESTNNDSVRERESSQQNQGRRNPFSFLWPFRSSSSSNSNNQYAETRGSNSSNSRDQNNGTNQNHS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1896 319 Pfam Ring finger domain 190 232 IPR001841 -
Lele04g1896 319 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lele04g1896 319 MobiDBLite consensus disorder prediction 241 319 - -
Lele04g1896 319 SMART ring_2 191 231 IPR001841 -
Lele04g1896 319 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Lele04g1896 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Lele04g1896 319 SUPERFAMILY RING/U-box 171 238 - -
Lele04g1896 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 236 - -
Lele04g1896 319 CDD RING-H2_RNF126_like 190 232 - -
Lele04g1896 319 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
Lele04g1896 319 MobiDBLite consensus disorder prediction 271 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1896 Lele-ChrLele04 23366096 23367055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1896 135 249 C3H Transcription Factor Family AT5G01980 40.171 2.64e-24 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1582 01 10495397 10496362 Lele04g1896 04 23366096 23367055 hybridization
Lele02g1931 02 22792964 22793899 Lele04g1896 04 23366096 23367055 hybridization