Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1894 ATGCCTACCAACATGCGAAACCTTATCTTTCATTTCTGCTTCATGTTCTTCATGGTCTGCCCATGTTTATGTGACTCCAATTTTACAAGTTCCGATGAACTGGCGCTTCTTGCTTTCAAATCTTCTGTTAGTGATCCTTACAATCACTTGAAAAACTGGTCCAATTCCTCTTCCATATGCAATTGGTCTGGTGTTACATGTGATTCTGACCATGAGAGAGTGAAAATACTGAGTCTTCCTAAGATGGGTCTCAAAGGAACATTACCCTCACAAATTGGCAATATGTCCTTCCTTGTAAAACTCGACCTCAACAACAACACCTTGTACGGTAAGTTACCAAAAGAGTTGATTCAGTTGCAGAGGTTAGAAATTCTGAACTTGAGCTATAATTCATTCATTGGAGAAATCCCAAGTTGGATTGGAAGCATATTTACTCTTCAACACTTGGTTCTTGGTAATAATAGTTTTGGAGGCATGGTTCCTTCAAGTATATCCAATTTGTCTAAGTTGGAGAATTTGGATTTGAATTCTAATTTTATTGAAGGGCCTATTCCTTTTGATATTGGAAGGCTTCAACATCTCAAAATTTTACGACTTTCAGTGAATAAGCTTTCAGGAATTATACCTCCAACTATCTCTAATATATCCTCACTTGAGTGGCTCTCTTTGTCTCTCTACCTCTTATCAGGACATATTCCCATAGAAATGGATAAGCTTACAAAGCTGAAAATTATATACTTGGGAGTTAATAAGTTGACGGGCCAAATACCAAGAAGTATTGGGAACTTGATCATGCTTCAAGAATTATATCTTTCAAACAATAACTTACAAGGAAATATTCCCAACGAGATTAGCAATCTTACAAATGCGAACAAAATATACTTGAATGATAATCAATTGTCTGGTTACATACCAAAAAGCATTGGAAAATTGACTATGCTTCAAGAGTTATCTCTTGCCAACAATAACTTAGAAGGAAATATTCCCGATGAAATTAGAAGCCTTACAAATCTGAAAATTGTAGACCTATCAGTTAATCAACTATTTGGTCACATAACAAGAGGAATTGGAAACTTGTCTACGCTTCAAGATTTATATCTTGAAAGTAATAATTTACAAGGCCCAATACCTCCGGAAATAGGCAATCTTCAACAACTTGAGGCATTATTACATTTGAAAACTCTGACTCTCTCAAACAATCGATTATTGCATATGAAGCTTCCCAAGTCCATTGGAAACTTGTCTAATTCTCTACAGACGCTGTTGATAAACTCTTGCGGGATTAATGATGAAGGGAAATCAAGGACCCAAACAAAGACAATACCTACAATTGGTTATGTTGCACCTGAATATGGAACTCTTGGAATTGTTTCAACAAAAGTAGATGTGTACAGCTATGGAATAATACTAATAGAAGTATTCACAAGAAAAAAGCCAACAGAAGATATGTTTGTGGATGGATTGAGCTTGAAGAGTTGGGTTTGTGAATCAATGTCATCAAATGCATTGGCTCAAGTCATAGATTCCAATTTATTACAAGATGATGAACAATATATTGGCAATATTTTGAAAACTACATCCACTATTCTTAAATTGGCCTTGCATTGTTGCGCCAATTCTTCACAAAGGCGTTGCAGTATGTCAGATGTTGTGGTATCATTAAACAAGATCAAGGACGTGTTTATGGAAACATGTTATTTAAAGAAATATTGA 1713 0.3543 MPTNMRNLIFHFCFMFFMVCPCLCDSNFTSSDELALLAFKSSVSDPYNHLKNWSNSSSICNWSGVTCDSDHERVKILSLPKMGLKGTLPSQIGNMSFLVKLDLNNNTLYGKLPKELIQLQRLEILNLSYNSFIGEIPSWIGSIFTLQHLVLGNNSFGGMVPSSISNLSKLENLDLNSNFIEGPIPFDIGRLQHLKILRLSVNKLSGIIPPTISNISSLEWLSLSLYLLSGHIPIEMDKLTKLKIIYLGVNKLTGQIPRSIGNLIMLQELYLSNNNLQGNIPNEISNLTNANKIYLNDNQLSGYIPKSIGKLTMLQELSLANNNLEGNIPDEIRSLTNLKIVDLSVNQLFGHITRGIGNLSTLQDLYLESNNLQGPIPPEIGNLQQLEALLHLKTLTLSNNRLLHMKLPKSIGNLSNSLQTLLINSCGINDEGKSRTQTKTIPTIGYVAPEYGTLGIVSTKVDVYSYGIILIEVFTRKKPTEDMFVDGLSLKSWVCESMSSNALAQVIDSNLLQDDEQYIGNILKTTSTILKLALHCCANSSQRRCSMSDVVVSLNKIKDVFMETCYLKKY 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1894 570 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 440 547 - -
Lele04g1894 570 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 188 - -
Lele04g1894 570 SMART LRR_sd22_2 389 416 - -
Lele04g1894 570 SMART LRR_sd22_2 335 361 - -
Lele04g1894 570 SMART LRR_sd22_2 167 182 - -
Lele04g1894 570 SMART LRR_sd22_2 239 265 - -
Lele04g1894 570 SMART LRR_sd22_2 191 217 - -
Lele04g1894 570 Pfam Protein tyrosine and serine/threonine kinase 430 553 IPR001245 GO:0004672|GO:0006468
Lele04g1894 570 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 208 429 - -
Lele04g1894 570 Gene3D Transferase(Phosphotransferase) domain 1 418 566 - -
Lele04g1894 570 ProSiteProfiles Protein kinase domain profile. 145 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g1894 570 Gene3D Ribonuclease Inhibitor 238 390 IPR032675 -
Lele04g1894 570 Gene3D Ribonuclease Inhibitor 184 237 IPR032675 -
Lele04g1894 570 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515
Lele04g1894 570 Pfam Leucine Rich Repeat 266 287 IPR001611 GO:0005515
Lele04g1894 570 SUPERFAMILY L domain-like 47 426 - -
Lele04g1894 570 SUPERFAMILY Protein kinase-like (PK-like) 436 560 IPR011009 -
Lele04g1894 570 SMART LRR_typ_2 263 287 IPR003591 -
Lele04g1894 570 SMART LRR_typ_2 167 191 IPR003591 -
Lele04g1894 570 SMART LRR_typ_2 95 119 IPR003591 -
Lele04g1894 570 SMART LRR_typ_2 389 414 IPR003591 -
Lele04g1894 570 SMART LRR_typ_2 359 383 IPR003591 -
Lele04g1894 570 SMART LRR_typ_2 311 335 IPR003591 -
Lele04g1894 570 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Lele04g1894 570 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1894 Lele-ChrLele04 23319964 23330921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1894 433 565 Receptor kinase-like Gene Family AT1G08590 31.343 1.37e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lele04g1894 PK_Tyr_Ser-Thr 8.2e-08 CL0016