Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele04g1858 | ATGGGCAACTGTTGCTCTGGCAACGACACCGATGCCCCGGCTTCCGATGCCGAGGTTGCAAAGGGAGGATCCACAAACAACAACTCCCAAGGAGGTAGCAACCCCGGAGGAGATGGGGGAGGAGGTGGTGGTGGCGAGGCTTCCGCGAAATCATCCCCCGCCCCTAATCATCCTCCGTCCAAACCCGCAAAAACCGGCCCGATGGGCCCCGTCCTTCAGCGTCCCATGGAGGACGTGAAAGCCACATACAGCATTGGAAAAGAGCTCGGAAGAGGACAATTTGGGGTGACGCATTTGTGCACGCATAAAGCCACCGGACAACAATACGCGTGCAAGACGATCGCGAAGAGGAAGCTCTCGAATAAAGAAGATATCGAAGACGTGAGGAGGGAGGTTCAGATCATGCACCATTTGGCGGGACAAGCGAACGTGGTGGAGCTGAAAGGAGCTTTTGAGGATAAACATTCGGTGCATCTGGTTATGGAGCTGTGCGCCGGCGGCGAACTTTTCGATCGGATTATCGAGAAGGGTCATTACACGGAACGAGGGGCGGCGTCGTTGATGAGGACGATAGTGCAGATCGTTCATACTTGTCATTCCATGGGCGTCATTCATAGAGATCTCAAACCTGAGAATTTCTTGCTCTTGAATAAGAAGGAGGATTCGCCTCTCAAAGCAACCGATTTCGGATTATCAGTTTTCTACAAAGAAGGGGAGACATTTAAAGATATAGTTGGGAGTGCATATTATATAGCTCCGGAGGTATTGAAAAGGAAATATGGGCCAGAAGTTGATATTTGGAGTATTGGTGTTATGCTCTACATTCTTCTTTGTGGTGTTCCTCCTTTTTGGGCAGAATCTGAGCATGGAATCTTCAATGCCATATTAAGAGGCCACATAGATTTCTCAGCCGATCCATGGCCATCCATATCACCTTCAGCAAAAGATCTTGTCAAGAAAATGTTGAGTTCTGATCCCAAAGCTAGGCTCACAGCCCACCAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGACAATGCCGTGCTCAATAGGCTCAAGCAGTTCAGAGCAATGAACCAATTCAAGAAAGCTGCTTTAAGGGTGATTGCTGGGTGCTTGTCAGAGGAAGAAATAATGGGACTGAAGGAAATGTTCAAGAACATGGACACTGATGGCAGTGGAACCATTACAGTAGAAGAGCTCAAGCAAGGCCTTGCTAAACAAGGAACCAAGCTTTCTGAACAAGAAGTTAAACAATTAATGGAAGCTGCTGATGCAGATGGCAATGGAACCATAGATTATGATGAGTTCATTACAGCAACAATGCAGATGAACAGAATGAACAAAGAAGAACATCTCTACACTGCCTTCCAATATTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAAATGGAAGAAGCTCTCAAGGACTTTAACATGCTTGACGGCAGGGACATCAAAGAAATCATCTCAGAAGTTGACTCAGATAATGATGGAAGGATAAACTATGAAGAGTTTGTAGCAATGATGGGAAAAGGAAACCCAGAAGCTAAGACAAAGAAGAGGCGTGATTCATATGTTTGA | 1614 | 0.4628 | MGNCCSGNDTDAPASDAEVAKGGSTNNNSQGGSNPGGDGGGGGGGEASAKSSPAPNHPPSKPAKTGPMGPVLQRPMEDVKATYSIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLSNKEDIEDVRREVQIMHHLAGQANVVELKGAFEDKHSVHLVMELCAGGELFDRIIEKGHYTERGAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKKEDSPLKATDFGLSVFYKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFSADPWPSISPSAKDLVKKMLSSDPKARLTAHQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKNMDTDGSGTITVEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNKEEHLYTAFQYFDKDNSGYITIEEMEEALKDFNMLDGRDIKEIISEVDSDNDGRINYEEFVAMMGKGNPEAKTKKRRDSYV | 537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele04g1858 | 537 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 384 | 419 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 420 | 455 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 495 | 526 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | FunFam | calcium-dependent protein kinase 1 | 169 | 348 | - | - | |
| Lele04g1858 | 537 | FunFam | Calcium-dependent protein kinase 1 | 349 | 524 | - | - | |
| Lele04g1858 | 537 | ProSitePatterns | EF-hand calcium-binding domain. | 469 | 481 | IPR018247 | - | |
| Lele04g1858 | 537 | ProSitePatterns | EF-hand calcium-binding domain. | 504 | 516 | IPR018247 | - | |
| Lele04g1858 | 537 | MobiDBLite | consensus disorder prediction | 20 | 35 | - | - | |
| Lele04g1858 | 537 | ProSitePatterns | Protein kinases ATP-binding region signature. | 89 | 116 | IPR017441 | GO:0005524 | |
| Lele04g1858 | 537 | Pfam | EF-hand domain pair | 389 | 449 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | Pfam | EF-hand domain pair | 458 | 520 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | Gene3D | Transferase(Phosphotransferase) domain 1 | 169 | 348 | - | - | |
| Lele04g1858 | 537 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 456 | 491 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | Pfam | Protein kinase domain | 83 | 341 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele04g1858 | 537 | ProSitePatterns | EF-hand calcium-binding domain. | 397 | 409 | IPR018247 | - | |
| Lele04g1858 | 537 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 77 | 516 | - | - | |
| Lele04g1858 | 537 | SMART | efh_1 | 424 | 452 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | SMART | efh_1 | 388 | 416 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | SMART | efh_1 | 460 | 488 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | SMART | efh_1 | 495 | 523 | IPR002048 | GO:0005509 | |
| Lele04g1858 | 537 | Gene3D | Phosphorylase Kinase; domain 1 | 85 | 168 | - | - | |
| Lele04g1858 | 537 | FunFam | Calcium-dependent protein kinase 1 | 85 | 168 | - | - | |
| Lele04g1858 | 537 | SUPERFAMILY | EF-hand | 381 | 520 | IPR011992 | - | |
| Lele04g1858 | 537 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 368 | IPR011009 | - | |
| Lele04g1858 | 537 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
| Lele04g1858 | 537 | ProSitePatterns | EF-hand calcium-binding domain. | 433 | 445 | IPR018247 | - | |
| Lele04g1858 | 537 | CDD | STKc_CAMK | 83 | 340 | - | - | |
| Lele04g1858 | 537 | Gene3D | - | 349 | 524 | - | - | |
| Lele04g1858 | 537 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672|GO:0006468 | |
| Lele04g1858 | 537 | ProSiteProfiles | Protein kinase domain profile. | 83 | 341 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele04g1858 | 537 | SMART | serkin_6 | 83 | 341 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele04g1858 | Lele-ChrLele04 | 22988554 | 22992493 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele04g1858 | 1 | 534 | EF-hand Containing Proteins | AT5G12180 | 78.810 | 0.0 | 880 |
Transcription factors information