Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1842 ATGACTTCAGTCGTGATGATCGAAGGCGAACAGCTCCCCGCCATCGATTTTCAGGATTTGTCCCTCCAAGATAAGAGTGAAATGCGAAATGAAGCAGAGATCCTCCCGGTGGGATCTGAGAACGATGGGGGAATCTGTGCGATTTGCCTGGATAAGATAGTACTGCATGAAACTGCGCTCGTTAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATTCTTCAATGGGCCACGTATCGCCCGAAGGCCACCTGCCCCCAATGTAAACATCCATTTGAGTTTCTTAATGTCCATCGCTCCCTTGATGGCAGGCTTCATGACTATATGTTTGAGGAAAGTGTCTGCCTACTTCTTAGAGCTTCATGGTTTAAACCTTTAGATGTAGAAGATCATGCTGAGCATGAAGAGATGTATAGGTATGATGACATCATTGAGGATTATTATTATGAATATGACGATGAGGAAGATGACTTAGATGAAGCTTATTATGGTGGCTCATCAAGCATCCGTATCGGTAACCGGAGATGGGGAGACAATGGCTATGTTAGGGCTGGTCGGCAACAAGCTAGGCCGGTCTCTCAACCTAACTCCCAGAACTTTGGGGCAAGCTCATCGTCCCGTGAGCCAAAGAACAAAGAAGTTGTCAAAGGTGCTACAACTGGACGACGAGCGAAACGAGCACAGAAACGGGAGGCAGCTGATAAGGCTGCTGCGGCGAAGCATCAGCAGCATCTAGTGAGGCTGGGAAGGAAGTGA 756 0.4775 MTSVVMIEGEQLPAIDFQDLSLQDKSEMRNEAEILPVGSENDGGICAICLDKIVLHETALVKGCEHAYCVTCILQWATYRPKATCPQCKHPFEFLNVHRSLDGRLHDYMFEESVCLLLRASWFKPLDVEDHAEHEEMYRYDDIIEDYYYEYDDEEDDLDEAYYGGSSSIRIGNRRWGDNGYVRAGRQQARPVSQPNSQNFGASSSSREPKNKEVVKGATTGRRAKRAQKREAADKAAAAKHQQHLVRLGRK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1842 251 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Lele04g1842 251 SUPERFAMILY RING/U-box 45 95 - -
Lele04g1842 251 MobiDBLite consensus disorder prediction 189 208 - -
Lele04g1842 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Lele04g1842 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 251 - -
Lele04g1842 251 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Lele04g1842 251 MobiDBLite consensus disorder prediction 185 251 - -
Lele04g1842 251 SMART ring_2 46 88 IPR001841 -
Lele04g1842 251 MobiDBLite consensus disorder prediction 209 241 - -
Lele04g1842 251 Pfam Ring finger domain 46 89 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1842 Lele-ChrLele04 22852549 22854951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1842 1 251 C3H Transcription Factor Family AT5G19430 58.687 2.30e-86 255